Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04225

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04220 and HER17_RS04225 are separated by 214 nucleotidesHER17_RS04225 and HER17_RS04230 are separated by 542 nucleotides HER17_RS04220: HER17_RS04220 - hypothetical protein, at 962,651 to 964,330 _RS04220 HER17_RS04225: HER17_RS04225 - EAL domain-containing protein, at 964,545 to 965,285 _RS04225 HER17_RS04230: HER17_RS04230 - PilZ domain-containing protein, at 965,828 to 967,552 _RS04230 Position (kb) 964 965 966Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 963.691 kb on + strand, within HER17_RS04220at 963.755 kb on + strand, within HER17_RS04220at 963.777 kb on - strand, within HER17_RS04220at 963.786 kb on + strand, within HER17_RS04220at 963.963 kb on + strand, within HER17_RS04220at 963.964 kb on - strand, within HER17_RS04220at 963.997 kb on + strand, within HER17_RS04220at 963.997 kb on + strand, within HER17_RS04220at 963.998 kb on - strand, within HER17_RS04220at 963.998 kb on - strand, within HER17_RS04220at 963.998 kb on - strand, within HER17_RS04220at 963.998 kb on - strand, within HER17_RS04220at 964.034 kb on + strand, within HER17_RS04220at 964.034 kb on + strand, within HER17_RS04220at 964.035 kb on - strand, within HER17_RS04220at 964.071 kb on + strand, within HER17_RS04220at 964.072 kb on - strand, within HER17_RS04220at 964.072 kb on - strand, within HER17_RS04220at 964.072 kb on - strand, within HER17_RS04220at 964.072 kb on - strand, within HER17_RS04220at 964.119 kb on + strand, within HER17_RS04220at 964.172 kb on - strandat 964.172 kb on - strandat 964.176 kb on + strandat 964.176 kb on + strandat 964.176 kb on + strandat 964.198 kb on + strandat 964.198 kb on + strandat 964.232 kb on - strandat 964.234 kb on + strandat 964.234 kb on + strandat 964.235 kb on - strandat 964.235 kb on - strandat 964.255 kb on - strandat 964.255 kb on - strandat 964.301 kb on - strandat 964.389 kb on - strandat 964.466 kb on + strandat 964.466 kb on + strandat 964.477 kb on + strandat 964.495 kb on + strandat 964.542 kb on + strandat 964.543 kb on - strandat 964.566 kb on + strandat 964.566 kb on + strandat 964.567 kb on - strandat 964.567 kb on - strandat 964.598 kb on + strandat 964.598 kb on + strandat 964.598 kb on + strandat 964.599 kb on - strandat 964.599 kb on - strandat 964.599 kb on - strandat 964.600 kb on + strandat 964.600 kb on + strandat 964.600 kb on + strandat 964.601 kb on - strandat 964.624 kb on + strand, within HER17_RS04225at 964.625 kb on - strand, within HER17_RS04225at 964.625 kb on - strand, within HER17_RS04225at 964.629 kb on - strand, within HER17_RS04225at 964.673 kb on + strand, within HER17_RS04225at 964.673 kb on + strand, within HER17_RS04225at 964.674 kb on - strand, within HER17_RS04225at 964.708 kb on - strand, within HER17_RS04225at 964.761 kb on - strand, within HER17_RS04225at 964.776 kb on + strand, within HER17_RS04225at 964.809 kb on + strand, within HER17_RS04225at 964.810 kb on - strand, within HER17_RS04225at 964.810 kb on - strand, within HER17_RS04225at 964.896 kb on + strand, within HER17_RS04225at 965.011 kb on - strand, within HER17_RS04225at 965.056 kb on - strand, within HER17_RS04225at 965.096 kb on + strand, within HER17_RS04225at 965.310 kb on + strandat 965.311 kb on - strandat 965.392 kb on + strandat 965.570 kb on + strandat 965.587 kb on + strandat 965.587 kb on + strandat 965.601 kb on + strandat 965.602 kb on - strandat 965.663 kb on + strandat 965.813 kb on + strandat 965.886 kb on - strandat 965.896 kb on + strandat 965.901 kb on - strandat 965.916 kb on + strandat 965.917 kb on - strandat 965.918 kb on + strandat 965.918 kb on + strandat 966.008 kb on + strand, within HER17_RS04230at 966.095 kb on - strand, within HER17_RS04230at 966.108 kb on + strand, within HER17_RS04230at 966.109 kb on - strand, within HER17_RS04230at 966.124 kb on + strand, within HER17_RS04230at 966.125 kb on - strand, within HER17_RS04230at 966.125 kb on - strand, within HER17_RS04230at 966.240 kb on - strand, within HER17_RS04230at 966.240 kb on - strand, within HER17_RS04230at 966.243 kb on + strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.247 kb on + strand, within HER17_RS04230at 966.247 kb on + strand, within HER17_RS04230at 966.247 kb on + strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.275 kb on - strand, within HER17_RS04230

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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963,691 + HER17_RS04220 0.62 +0.2
963,755 + HER17_RS04220 0.66 -0.1
963,777 - HER17_RS04220 0.67 -0.7
963,786 + HER17_RS04220 0.68 +0.6
963,963 + HER17_RS04220 0.78 +0.6
963,964 - HER17_RS04220 0.78 -0.6
963,997 + HER17_RS04220 0.80 -1.2
963,997 + HER17_RS04220 0.80 -0.1
963,998 - HER17_RS04220 0.80 +0.1
963,998 - HER17_RS04220 0.80 -0.5
963,998 - HER17_RS04220 0.80 +1.4
963,998 - HER17_RS04220 0.80 +0.1
964,034 + HER17_RS04220 0.82 +0.2
964,034 + HER17_RS04220 0.82 -0.2
964,035 - HER17_RS04220 0.82 -0.1
964,071 + HER17_RS04220 0.85 +0.7
964,072 - HER17_RS04220 0.85 -1.1
964,072 - HER17_RS04220 0.85 +0.1
964,072 - HER17_RS04220 0.85 +0.1
964,072 - HER17_RS04220 0.85 -0.0
964,119 + HER17_RS04220 0.87 -0.5
964,172 - -0.4
964,172 - +0.2
964,176 + +0.0
964,176 + +1.2
964,176 + -0.1
964,198 + -0.0
964,198 + -0.2
964,232 - +0.1
964,234 + +0.2
964,234 + -2.0
964,235 - +0.4
964,235 - -0.8
964,255 - -0.7
964,255 - +1.9
964,301 - +0.1
964,389 - -0.3
964,466 + +0.6
964,466 + -0.4
964,477 + -0.4
964,495 + +0.2
964,542 + -0.6
964,543 - -0.2
964,566 + -1.2
964,566 + -0.1
964,567 - -0.2
964,567 - -0.0
964,598 + +0.6
964,598 + +0.3
964,598 + -0.4
964,599 - -0.7
964,599 - +0.1
964,599 - -1.4
964,600 + +0.1
964,600 + +0.4
964,600 + -0.2
964,601 - -2.8
964,624 + HER17_RS04225 0.11 +0.3
964,625 - HER17_RS04225 0.11 -0.2
964,625 - HER17_RS04225 0.11 +0.1
964,629 - HER17_RS04225 0.11 -0.5
964,673 + HER17_RS04225 0.17 -0.3
964,673 + HER17_RS04225 0.17 +0.3
964,674 - HER17_RS04225 0.17 -0.2
964,708 - HER17_RS04225 0.22 -0.4
964,761 - HER17_RS04225 0.29 +0.1
964,776 + HER17_RS04225 0.31 -0.1
964,809 + HER17_RS04225 0.36 -0.3
964,810 - HER17_RS04225 0.36 -0.8
964,810 - HER17_RS04225 0.36 +0.3
964,896 + HER17_RS04225 0.47 -1.5
965,011 - HER17_RS04225 0.63 -2.4
965,056 - HER17_RS04225 0.69 +1.0
965,096 + HER17_RS04225 0.74 -0.0
965,310 + +0.1
965,311 - +0.5
965,392 + -0.4
965,570 + -0.7
965,587 + -1.0
965,587 + +0.4
965,601 + +0.4
965,602 - +0.4
965,663 + -1.1
965,813 + -1.0
965,886 - -0.5
965,896 + +0.4
965,901 - +0.2
965,916 + +0.5
965,917 - -0.2
965,918 + -0.4
965,918 + +0.1
966,008 + HER17_RS04230 0.10 -0.4
966,095 - HER17_RS04230 0.15 +0.6
966,108 + HER17_RS04230 0.16 +0.1
966,109 - HER17_RS04230 0.16 +0.1
966,124 + HER17_RS04230 0.17 -0.0
966,125 - HER17_RS04230 0.17 +0.4
966,125 - HER17_RS04230 0.17 -0.1
966,240 - HER17_RS04230 0.24 -0.2
966,240 - HER17_RS04230 0.24 +0.1
966,243 + HER17_RS04230 0.24 -0.2
966,244 - HER17_RS04230 0.24 +0.5
966,244 - HER17_RS04230 0.24 -0.4
966,244 - HER17_RS04230 0.24 -0.8
966,244 - HER17_RS04230 0.24 +0.1
966,247 + HER17_RS04230 0.24 -0.2
966,247 + HER17_RS04230 0.24 -0.2
966,247 + HER17_RS04230 0.24 -1.5
966,248 - HER17_RS04230 0.24 +0.7
966,248 - HER17_RS04230 0.24 -0.6
966,248 - HER17_RS04230 0.24 -1.2
966,248 - HER17_RS04230 0.24 +0.9
966,248 - HER17_RS04230 0.24 -0.9
966,275 - HER17_RS04230 0.26 +0.0

Or see this region's nucleotide sequence