Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04020 and HER17_RS04025 are separated by 369 nucleotides HER17_RS04025 and HER17_RS04030 are separated by 264 nucleotides
HER17_RS04020: HER17_RS04020 - multifunctional CCA addition/repair protein, at 906,313 to 907,557
_RS04020
HER17_RS04025: HER17_RS04025 - SH3 domain-containing protein, at 907,927 to 908,547
_RS04025
HER17_RS04030: HER17_RS04030 - inorganic triphosphatase, at 908,812 to 910,149
_RS04030
Position (kb) 907
908
909 Strain fitness (log2 ratio) -2
-1
0
1
2 at 907.548 kb on - strand at 907.548 kb on - strand at 907.585 kb on - strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.597 kb on - strand at 907.597 kb on - strand at 907.597 kb on - strand at 907.597 kb on - strand at 907.599 kb on + strand at 907.599 kb on + strand at 907.599 kb on + strand at 907.599 kb on + strand at 907.600 kb on - strand at 907.600 kb on - strand at 907.600 kb on - strand at 907.600 kb on - strand at 907.675 kb on - strand at 907.675 kb on - strand at 907.706 kb on - strand at 907.806 kb on + strand at 907.806 kb on + strand at 907.806 kb on + strand at 907.807 kb on - strand at 907.851 kb on - strand at 907.857 kb on + strand at 907.920 kb on - strand at 907.929 kb on - strand at 907.969 kb on - strand at 908.000 kb on - strand, within HER17_RS04025 at 908.022 kb on - strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.055 kb on + strand, within HER17_RS04025 at 908.104 kb on - strand, within HER17_RS04025 at 908.214 kb on + strand, within HER17_RS04025 at 908.215 kb on - strand, within HER17_RS04025 at 908.217 kb on + strand, within HER17_RS04025 at 908.218 kb on - strand, within HER17_RS04025 at 908.218 kb on - strand, within HER17_RS04025 at 908.218 kb on - strand, within HER17_RS04025 at 908.293 kb on - strand, within HER17_RS04025 at 908.293 kb on - strand, within HER17_RS04025 at 908.293 kb on - strand, within HER17_RS04025 at 908.349 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.468 kb on + strand, within HER17_RS04025 at 908.469 kb on - strand, within HER17_RS04025 at 908.580 kb on + strand at 908.580 kb on + strand at 908.580 kb on + strand at 908.591 kb on + strand at 908.592 kb on - strand at 908.592 kb on - strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.612 kb on + strand at 908.613 kb on - strand at 908.634 kb on + strand at 908.634 kb on + strand at 908.658 kb on - strand at 908.670 kb on + strand at 908.670 kb on + strand at 908.670 kb on + strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.682 kb on + strand at 908.745 kb on + strand at 908.745 kb on + strand at 908.745 kb on + strand at 908.746 kb on - strand at 908.749 kb on - strand at 908.749 kb on - strand at 908.749 kb on - strand at 908.749 kb on - strand at 908.758 kb on + strand at 908.758 kb on + strand at 908.770 kb on + strand at 908.770 kb on + strand at 908.771 kb on - strand at 908.771 kb on - strand at 908.771 kb on - strand at 908.781 kb on + strand at 908.781 kb on + strand at 908.782 kb on - strand at 908.782 kb on - strand at 908.782 kb on - strand at 908.782 kb on - strand at 908.811 kb on + strand at 908.811 kb on + strand at 908.811 kb on + strand at 908.811 kb on + strand at 908.838 kb on + strand at 908.839 kb on - strand at 908.839 kb on - strand at 908.899 kb on + strand at 908.908 kb on + strand at 908.908 kb on + strand at 908.909 kb on - strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.941 kb on - strand at 908.941 kb on - strand at 908.941 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.962 kb on - strand, within HER17_RS04030 at 908.966 kb on - strand, within HER17_RS04030 at 908.966 kb on - strand, within HER17_RS04030 at 908.966 kb on - strand, within HER17_RS04030 at 908.994 kb on + strand, within HER17_RS04030 at 909.076 kb on + strand, within HER17_RS04030 at 909.077 kb on - strand, within HER17_RS04030 at 909.077 kb on - strand, within HER17_RS04030 at 909.078 kb on + strand, within HER17_RS04030 at 909.078 kb on + strand, within HER17_RS04030 at 909.079 kb on - strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.220 kb on - strand, within HER17_RS04030 at 909.224 kb on - strand, within HER17_RS04030 at 909.226 kb on + strand, within HER17_RS04030 at 909.251 kb on + strand, within HER17_RS04030 at 909.252 kb on - strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.376 kb on - strand, within HER17_RS04030 at 909.396 kb on + strand, within HER17_RS04030 at 909.397 kb on - strand, within HER17_RS04030 at 909.397 kb on - strand, within HER17_RS04030 at 909.413 kb on - strand, within HER17_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 907,548 - -0.3 907,548 - +0.8 907,585 - +0.9 907,596 + -0.2 907,596 + -0.4 907,596 + -0.1 907,596 + -0.3 907,596 + -0.5 907,596 + +0.4 907,596 + +0.1 907,596 + -0.5 907,596 + -0.7 907,596 + -0.5 907,596 + -0.4 907,597 - -0.6 907,597 - -0.6 907,597 - -0.1 907,597 - -0.1 907,599 + -0.0 907,599 + +0.2 907,599 + -0.1 907,599 + +0.1 907,600 - +0.9 907,600 - +0.3 907,600 - +0.1 907,600 - -0.2 907,675 - -1.1 907,675 - -0.3 907,706 - +0.6 907,806 + -0.6 907,806 + -0.1 907,806 + +0.7 907,807 - -0.5 907,851 - +0.4 907,857 + -0.3 907,920 - +0.4 907,929 - +0.4 907,969 - -0.8 908,000 - HER17_RS04025 0.12 -0.2 908,022 - HER17_RS04025 0.15 -0.2 908,025 + HER17_RS04025 0.16 +0.9 908,025 + HER17_RS04025 0.16 +0.5 908,025 + HER17_RS04025 0.16 +0.5 908,025 + HER17_RS04025 0.16 -0.3 908,025 + HER17_RS04025 0.16 +0.6 908,025 + HER17_RS04025 0.16 -0.6 908,026 - HER17_RS04025 0.16 +0.2 908,026 - HER17_RS04025 0.16 -0.4 908,026 - HER17_RS04025 0.16 +0.2 908,026 - HER17_RS04025 0.16 -0.8 908,026 - HER17_RS04025 0.16 -0.2 908,055 + HER17_RS04025 0.21 -0.2 908,104 - HER17_RS04025 0.29 +0.4 908,214 + HER17_RS04025 0.46 -1.8 908,215 - HER17_RS04025 0.46 +0.4 908,217 + HER17_RS04025 0.47 +0.3 908,218 - HER17_RS04025 0.47 +0.1 908,218 - HER17_RS04025 0.47 +0.1 908,218 - HER17_RS04025 0.47 -0.2 908,293 - HER17_RS04025 0.59 -0.8 908,293 - HER17_RS04025 0.59 -0.2 908,293 - HER17_RS04025 0.59 +0.3 908,349 - HER17_RS04025 0.68 -0.6 908,445 - HER17_RS04025 0.83 -0.9 908,445 - HER17_RS04025 0.83 +0.5 908,445 - HER17_RS04025 0.83 -0.3 908,445 - HER17_RS04025 0.83 -0.7 908,445 - HER17_RS04025 0.83 -0.1 908,468 + HER17_RS04025 0.87 -0.3 908,469 - HER17_RS04025 0.87 +0.1 908,580 + -0.3 908,580 + +0.2 908,580 + -0.4 908,591 + +0.3 908,592 - -0.6 908,592 - -1.2 908,610 + +0.3 908,610 + -0.3 908,611 - +0.6 908,611 - +0.2 908,611 - -0.8 908,612 + -0.1 908,613 - -0.9 908,634 + -1.3 908,634 + +0.3 908,658 - -0.0 908,670 + -0.9 908,670 + -0.2 908,670 + -1.5 908,671 - +1.2 908,671 - -0.2 908,671 - +0.2 908,671 - +0.4 908,671 - -1.9 908,682 + +0.1 908,745 + -0.6 908,745 + -0.2 908,745 + +0.8 908,746 - +0.4 908,749 - +0.1 908,749 - -0.1 908,749 - -0.1 908,749 - +0.3 908,758 + -1.2 908,758 + -0.7 908,770 + +0.5 908,770 + -0.5 908,771 - +0.2 908,771 - +0.4 908,771 - -0.6 908,781 + +0.6 908,781 + -0.2 908,782 - +0.3 908,782 - -1.4 908,782 - -0.4 908,782 - -0.8 908,811 + -0.5 908,811 + +0.8 908,811 + +0.6 908,811 + -0.1 908,838 + +0.2 908,839 - -0.3 908,839 - -0.7 908,899 + -0.1 908,908 + -0.3 908,908 + -0.1 908,909 - -0.8 908,940 + -0.6 908,940 + +1.5 908,940 + +1.4 908,940 + -0.1 908,940 + -0.1 908,940 + -0.1 908,941 - +0.1 908,941 - +0.1 908,941 - -0.6 908,945 - +0.2 908,945 - +0.1 908,945 - -0.4 908,945 - -0.7 908,945 - -0.4 908,945 - +0.6 908,945 - -0.1 908,962 - HER17_RS04030 0.11 +0.3 908,966 - HER17_RS04030 0.12 -0.3 908,966 - HER17_RS04030 0.12 +0.5 908,966 - HER17_RS04030 0.12 -0.8 908,994 + HER17_RS04030 0.14 -0.7 909,076 + HER17_RS04030 0.20 +0.0 909,077 - HER17_RS04030 0.20 -0.2 909,077 - HER17_RS04030 0.20 +0.4 909,078 + HER17_RS04030 0.20 -0.1 909,078 + HER17_RS04030 0.20 +0.0 909,079 - HER17_RS04030 0.20 -0.8 909,219 + HER17_RS04030 0.30 +0.2 909,219 + HER17_RS04030 0.30 -0.6 909,219 + HER17_RS04030 0.30 +0.2 909,219 + HER17_RS04030 0.30 -0.0 909,220 - HER17_RS04030 0.30 -0.5 909,224 - HER17_RS04030 0.31 +0.3 909,226 + HER17_RS04030 0.31 -2.2 909,251 + HER17_RS04030 0.33 +0.2 909,252 - HER17_RS04030 0.33 +1.9 909,315 + HER17_RS04030 0.38 -0.1 909,315 + HER17_RS04030 0.38 +0.3 909,315 + HER17_RS04030 0.38 +0.7 909,315 + HER17_RS04030 0.38 -0.6 909,376 - HER17_RS04030 0.42 -0.9 909,396 + HER17_RS04030 0.44 +0.5 909,397 - HER17_RS04030 0.44 -2.3 909,397 - HER17_RS04030 0.44 -0.7 909,413 - HER17_RS04030 0.45 +0.9
Or see this region's nucleotide sequence