Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03600 and HER17_RS03605 are separated by 47 nucleotides HER17_RS03605 and HER17_RS03610 are separated by 45 nucleotides HER17_RS03610 and HER17_RS03615 are separated by 52 nucleotides HER17_RS03615 and HER17_RS03620 are separated by 118 nucleotides HER17_RS03620 and HER17_RS03625 are separated by 168 nucleotides
HER17_RS03600: HER17_RS03600 - DUF1240 domain-containing protein, at 822,243 to 822,647
_RS03600
HER17_RS03605: HER17_RS03605 - DUF1240 domain-containing protein, at 822,695 to 823,096
_RS03605
HER17_RS03610: HER17_RS03610 - DUF1240 domain-containing protein, at 823,142 to 823,549
_RS03610
HER17_RS03615: HER17_RS03615 - Hcp family type VI secretion system effector, at 823,602 to 824,081
_RS03615
HER17_RS03620: HER17_RS03620 - M48 family metallopeptidase, at 824,200 to 824,703
_RS03620
HER17_RS03625: HER17_RS03625 - aspartate/tyrosine/aromatic aminotransferase, at 824,872 to 826,065
_RS03625
Position (kb) 823
824
825 Strain fitness (log2 ratio) -2
-1
0
1 at 822.726 kb on + strand at 822.991 kb on + strand, within HER17_RS03605 at 822.992 kb on - strand, within HER17_RS03605 at 822.996 kb on - strand, within HER17_RS03605 at 823.326 kb on - strand, within HER17_RS03610 at 823.337 kb on + strand, within HER17_RS03610 at 823.421 kb on - strand, within HER17_RS03610 at 823.442 kb on + strand, within HER17_RS03610 at 823.443 kb on - strand, within HER17_RS03610 at 823.514 kb on + strand at 823.515 kb on - strand at 823.792 kb on - strand, within HER17_RS03615 at 823.957 kb on - strand, within HER17_RS03615 at 823.959 kb on + strand, within HER17_RS03615 at 824.032 kb on - strand, within HER17_RS03615 at 824.034 kb on + strand at 824.105 kb on - strand at 824.151 kb on + strand at 824.268 kb on - strand, within HER17_RS03620 at 824.297 kb on + strand, within HER17_RS03620 at 824.298 kb on - strand, within HER17_RS03620 at 824.387 kb on - strand, within HER17_RS03620 at 824.395 kb on + strand, within HER17_RS03620 at 824.420 kb on - strand, within HER17_RS03620 at 824.451 kb on + strand, within HER17_RS03620 at 824.452 kb on - strand, within HER17_RS03620 at 824.495 kb on + strand, within HER17_RS03620 at 824.531 kb on + strand, within HER17_RS03620 at 824.562 kb on - strand, within HER17_RS03620 at 824.562 kb on - strand, within HER17_RS03620 at 824.651 kb on - strand, within HER17_RS03620 at 824.661 kb on + strand at 824.662 kb on - strand at 824.703 kb on + strand at 824.703 kb on + strand at 824.764 kb on + strand at 824.765 kb on - strand at 824.765 kb on - strand at 824.775 kb on + strand at 824.776 kb on - strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.866 kb on + strand at 824.867 kb on - strand at 824.873 kb on + strand at 824.934 kb on + strand at 824.934 kb on + strand at 824.934 kb on + strand at 824.940 kb on + strand at 824.940 kb on + strand at 824.940 kb on + strand at 824.941 kb on - strand at 824.960 kb on + strand at 824.961 kb on - strand at 824.961 kb on - strand at 825.024 kb on + strand, within HER17_RS03625 at 825.045 kb on - strand, within HER17_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 822,726 + -0.5 822,991 + HER17_RS03605 0.74 +0.4 822,992 - HER17_RS03605 0.74 +0.6 822,996 - HER17_RS03605 0.75 -1.1 823,326 - HER17_RS03610 0.45 +0.1 823,337 + HER17_RS03610 0.48 -0.8 823,421 - HER17_RS03610 0.68 -0.3 823,442 + HER17_RS03610 0.74 -1.4 823,443 - HER17_RS03610 0.74 -0.1 823,514 + +0.4 823,515 - +0.3 823,792 - HER17_RS03615 0.40 -1.3 823,957 - HER17_RS03615 0.74 -0.2 823,959 + HER17_RS03615 0.74 -0.1 824,032 - HER17_RS03615 0.90 -1.1 824,034 + +0.9 824,105 - -0.3 824,151 + +0.2 824,268 - HER17_RS03620 0.13 +0.1 824,297 + HER17_RS03620 0.19 +0.4 824,298 - HER17_RS03620 0.19 -0.5 824,387 - HER17_RS03620 0.37 -0.8 824,395 + HER17_RS03620 0.39 +0.2 824,420 - HER17_RS03620 0.44 -0.5 824,451 + HER17_RS03620 0.50 -2.0 824,452 - HER17_RS03620 0.50 +0.0 824,495 + HER17_RS03620 0.59 +0.3 824,531 + HER17_RS03620 0.66 -0.2 824,562 - HER17_RS03620 0.72 -2.5 824,562 - HER17_RS03620 0.72 +0.8 824,651 - HER17_RS03620 0.89 +0.5 824,661 + +0.9 824,662 - -0.2 824,703 + -0.2 824,703 + +0.2 824,764 + -0.2 824,765 - -1.3 824,765 - +0.4 824,775 + -0.4 824,776 - -0.5 824,789 + +0.5 824,789 + +0.6 824,789 + -0.5 824,866 + +0.1 824,867 - -0.0 824,873 + +0.7 824,934 + -0.5 824,934 + -0.2 824,934 + +0.4 824,940 + -0.9 824,940 + -1.3 824,940 + -0.4 824,941 - -0.1 824,960 + -0.5 824,961 - +0.6 824,961 - -0.5 825,024 + HER17_RS03625 0.13 +0.1 825,045 - HER17_RS03625 0.14 -1.3
Or see this region's nucleotide sequence