Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS03495

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS03490 and HER17_RS03495 overlap by 4 nucleotidesHER17_RS03495 and HER17_RS03500 overlap by 4 nucleotides HER17_RS03490: HER17_RS03490 - glucosamine kinase, at 793,751 to 794,659 _RS03490 HER17_RS03495: HER17_RS03495 - glucosamine kinase, at 794,656 to 795,207 _RS03495 HER17_RS03500: HER17_RS03500 - ABC transporter substrate-binding protein, at 795,204 to 796,511 _RS03500 Position (kb) 794 795 796Strain fitness (log2 ratio) -1 0 1 2at 793.752 kb on + strandat 793.756 kb on + strandat 793.761 kb on + strandat 793.761 kb on + strandat 793.761 kb on + strandat 793.763 kb on + strandat 793.763 kb on + strandat 793.770 kb on + strandat 793.785 kb on - strandat 793.864 kb on + strand, within HER17_RS03490at 793.864 kb on + strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.869 kb on - strand, within HER17_RS03490at 793.869 kb on - strand, within HER17_RS03490at 793.869 kb on - strand, within HER17_RS03490at 793.906 kb on + strand, within HER17_RS03490at 793.906 kb on + strand, within HER17_RS03490at 793.907 kb on - strand, within HER17_RS03490at 793.969 kb on - strand, within HER17_RS03490at 794.025 kb on + strand, within HER17_RS03490at 794.026 kb on - strand, within HER17_RS03490at 794.026 kb on - strand, within HER17_RS03490at 794.169 kb on + strand, within HER17_RS03490at 794.169 kb on + strand, within HER17_RS03490at 794.169 kb on + strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.173 kb on + strand, within HER17_RS03490at 794.173 kb on + strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.364 kb on - strand, within HER17_RS03490at 794.377 kb on - strand, within HER17_RS03490at 794.406 kb on + strand, within HER17_RS03490at 794.459 kb on + strand, within HER17_RS03490at 794.460 kb on - strand, within HER17_RS03490at 794.543 kb on + strand, within HER17_RS03490at 794.544 kb on - strand, within HER17_RS03490at 794.598 kb on + strandat 794.599 kb on - strandat 794.599 kb on - strandat 794.620 kb on + strandat 794.620 kb on + strandat 794.621 kb on - strandat 794.621 kb on - strandat 794.621 kb on - strandat 794.634 kb on - strandat 794.684 kb on + strandat 794.685 kb on - strandat 794.850 kb on - strand, within HER17_RS03495at 795.104 kb on + strand, within HER17_RS03495at 795.286 kb on + strandat 795.286 kb on + strandat 795.287 kb on - strandat 795.317 kb on - strandat 795.394 kb on + strand, within HER17_RS03500at 795.394 kb on + strand, within HER17_RS03500at 795.394 kb on + strand, within HER17_RS03500at 795.395 kb on - strand, within HER17_RS03500at 795.395 kb on - strand, within HER17_RS03500at 795.452 kb on + strand, within HER17_RS03500at 795.452 kb on + strand, within HER17_RS03500at 795.453 kb on - strand, within HER17_RS03500at 795.453 kb on - strand, within HER17_RS03500at 795.453 kb on - strand, within HER17_RS03500at 795.626 kb on + strand, within HER17_RS03500at 795.626 kb on + strand, within HER17_RS03500at 795.626 kb on + strand, within HER17_RS03500at 795.627 kb on - strand, within HER17_RS03500at 795.686 kb on + strand, within HER17_RS03500at 795.722 kb on - strand, within HER17_RS03500at 795.766 kb on + strand, within HER17_RS03500at 795.766 kb on + strand, within HER17_RS03500at 795.767 kb on - strand, within HER17_RS03500at 795.767 kb on - strand, within HER17_RS03500at 795.839 kb on + strand, within HER17_RS03500at 795.840 kb on - strand, within HER17_RS03500at 795.840 kb on - strand, within HER17_RS03500at 795.892 kb on + strand, within HER17_RS03500at 795.893 kb on - strand, within HER17_RS03500at 795.911 kb on - strand, within HER17_RS03500at 795.911 kb on - strand, within HER17_RS03500at 795.911 kb on - strand, within HER17_RS03500at 795.960 kb on - strand, within HER17_RS03500at 796.125 kb on - strand, within HER17_RS03500at 796.168 kb on + strand, within HER17_RS03500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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793,752 + +0.4
793,756 + -0.9
793,761 + +0.1
793,761 + -0.6
793,761 + +0.3
793,763 + -0.4
793,763 + +0.7
793,770 + +0.2
793,785 - +0.7
793,864 + HER17_RS03490 0.12 +0.4
793,864 + HER17_RS03490 0.12 -0.1
793,865 - HER17_RS03490 0.13 +0.5
793,865 - HER17_RS03490 0.13 +0.6
793,865 - HER17_RS03490 0.13 +0.0
793,865 - HER17_RS03490 0.13 +0.1
793,868 + HER17_RS03490 0.13 +0.1
793,868 + HER17_RS03490 0.13 +0.7
793,868 + HER17_RS03490 0.13 -1.1
793,868 + HER17_RS03490 0.13 +0.2
793,868 + HER17_RS03490 0.13 -0.1
793,868 + HER17_RS03490 0.13 +0.3
793,869 - HER17_RS03490 0.13 +0.2
793,869 - HER17_RS03490 0.13 +0.1
793,869 - HER17_RS03490 0.13 +0.1
793,906 + HER17_RS03490 0.17 -0.0
793,906 + HER17_RS03490 0.17 -0.4
793,907 - HER17_RS03490 0.17 +0.2
793,969 - HER17_RS03490 0.24 -1.0
794,025 + HER17_RS03490 0.30 -0.1
794,026 - HER17_RS03490 0.30 +0.4
794,026 - HER17_RS03490 0.30 +0.1
794,169 + HER17_RS03490 0.46 +0.3
794,169 + HER17_RS03490 0.46 +0.1
794,169 + HER17_RS03490 0.46 +0.8
794,170 - HER17_RS03490 0.46 -0.3
794,170 - HER17_RS03490 0.46 -0.4
794,170 - HER17_RS03490 0.46 -0.2
794,170 - HER17_RS03490 0.46 +0.3
794,170 - HER17_RS03490 0.46 +0.8
794,173 + HER17_RS03490 0.46 -0.6
794,173 + HER17_RS03490 0.46 -0.2
794,174 - HER17_RS03490 0.47 -0.0
794,174 - HER17_RS03490 0.47 +0.6
794,174 - HER17_RS03490 0.47 +0.6
794,174 - HER17_RS03490 0.47 -0.3
794,364 - HER17_RS03490 0.67 -0.1
794,377 - HER17_RS03490 0.69 +0.1
794,406 + HER17_RS03490 0.72 -0.1
794,459 + HER17_RS03490 0.78 -0.5
794,460 - HER17_RS03490 0.78 -1.2
794,543 + HER17_RS03490 0.87 -0.9
794,544 - HER17_RS03490 0.87 +0.3
794,598 + +0.1
794,599 - +0.1
794,599 - -0.4
794,620 + -0.1
794,620 + +0.0
794,621 - +0.1
794,621 - +0.3
794,621 - -0.1
794,634 - -0.0
794,684 + -1.3
794,685 - +0.5
794,850 - HER17_RS03495 0.35 -0.3
795,104 + HER17_RS03495 0.81 +0.2
795,286 + -0.2
795,286 + -0.1
795,287 - -1.4
795,317 - -0.7
795,394 + HER17_RS03500 0.15 -1.3
795,394 + HER17_RS03500 0.15 -0.0
795,394 + HER17_RS03500 0.15 +0.1
795,395 - HER17_RS03500 0.15 -0.3
795,395 - HER17_RS03500 0.15 +0.3
795,452 + HER17_RS03500 0.19 -0.1
795,452 + HER17_RS03500 0.19 +0.5
795,453 - HER17_RS03500 0.19 +0.1
795,453 - HER17_RS03500 0.19 +0.5
795,453 - HER17_RS03500 0.19 -0.2
795,626 + HER17_RS03500 0.32 -0.3
795,626 + HER17_RS03500 0.32 +1.8
795,626 + HER17_RS03500 0.32 -1.3
795,627 - HER17_RS03500 0.32 +0.5
795,686 + HER17_RS03500 0.37 -0.3
795,722 - HER17_RS03500 0.40 +0.1
795,766 + HER17_RS03500 0.43 +0.9
795,766 + HER17_RS03500 0.43 +0.6
795,767 - HER17_RS03500 0.43 +0.3
795,767 - HER17_RS03500 0.43 -0.8
795,839 + HER17_RS03500 0.49 +0.1
795,840 - HER17_RS03500 0.49 -0.0
795,840 - HER17_RS03500 0.49 +0.1
795,892 + HER17_RS03500 0.53 +0.4
795,893 - HER17_RS03500 0.53 -0.4
795,911 - HER17_RS03500 0.54 +0.6
795,911 - HER17_RS03500 0.54 +0.4
795,911 - HER17_RS03500 0.54 +0.2
795,960 - HER17_RS03500 0.58 +0.3
796,125 - HER17_RS03500 0.70 +0.1
796,168 + HER17_RS03500 0.74 +0.1

Or see this region's nucleotide sequence