Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03415 and HER17_RS03420 are separated by 692 nucleotides HER17_RS03420 and HER17_RS03425 are separated by 45 nucleotides HER17_RS03425 and HER17_RS03430 are separated by 63 nucleotides
HER17_RS03415: HER17_RS03415 - choline trimethylamine-lyase, at 775,528 to 777,903
_RS03415
HER17_RS03420: HER17_RS03420 - SDR family oxidoreductase, at 778,596 to 779,285
_RS03420
HER17_RS03425: HER17_RS03425 - YhcH/YjgK/YiaL family protein, at 779,331 to 779,798
_RS03425
HER17_RS03430: HER17_RS03430 - exo-alpha-sialidase, at 779,862 to 781,049
_RS03430
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 777.615 kb on + strand, within HER17_RS03415 at 777.615 kb on + strand, within HER17_RS03415 at 777.703 kb on + strand at 777.780 kb on + strand at 777.834 kb on - strand at 777.834 kb on - strand at 777.843 kb on + strand at 777.843 kb on + strand at 777.843 kb on + strand at 777.843 kb on + strand at 777.844 kb on - strand at 777.844 kb on - strand at 777.844 kb on - strand at 777.844 kb on - strand at 777.847 kb on - strand at 777.863 kb on + strand at 777.885 kb on + strand at 777.886 kb on - strand at 777.886 kb on - strand at 777.886 kb on - strand at 777.895 kb on - strand at 777.913 kb on + strand at 777.914 kb on - strand at 777.919 kb on - strand at 777.967 kb on + strand at 778.085 kb on + strand at 778.085 kb on + strand at 778.085 kb on + strand at 778.086 kb on - strand at 778.086 kb on - strand at 778.086 kb on - strand at 778.088 kb on + strand at 778.089 kb on - strand at 778.089 kb on - strand at 778.089 kb on - strand at 778.089 kb on - strand at 778.106 kb on + strand at 778.259 kb on - strand at 778.261 kb on - strand at 778.285 kb on - strand at 778.332 kb on - strand at 778.338 kb on - strand at 778.347 kb on + strand at 778.347 kb on + strand at 778.348 kb on - strand at 778.501 kb on - strand at 778.536 kb on + strand at 778.537 kb on - strand at 778.552 kb on - strand at 778.552 kb on - strand at 778.552 kb on - strand at 778.552 kb on - strand at 778.794 kb on + strand, within HER17_RS03420 at 778.799 kb on + strand, within HER17_RS03420 at 778.800 kb on - strand, within HER17_RS03420 at 778.800 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.871 kb on - strand, within HER17_RS03420 at 778.965 kb on + strand, within HER17_RS03420 at 778.965 kb on + strand, within HER17_RS03420 at 778.966 kb on - strand, within HER17_RS03420 at 778.966 kb on - strand, within HER17_RS03420 at 779.082 kb on + strand, within HER17_RS03420 at 779.114 kb on + strand, within HER17_RS03420 at 779.159 kb on - strand, within HER17_RS03420 at 779.159 kb on - strand, within HER17_RS03420 at 779.354 kb on + strand at 779.489 kb on + strand, within HER17_RS03425 at 779.491 kb on + strand, within HER17_RS03425 at 779.491 kb on + strand, within HER17_RS03425 at 779.491 kb on + strand, within HER17_RS03425 at 779.492 kb on - strand, within HER17_RS03425 at 779.492 kb on - strand, within HER17_RS03425 at 779.504 kb on + strand, within HER17_RS03425 at 779.504 kb on + strand, within HER17_RS03425 at 779.505 kb on - strand, within HER17_RS03425 at 779.757 kb on + strand at 779.798 kb on + strand at 779.799 kb on - strand at 779.799 kb on - strand at 779.864 kb on - strand at 779.920 kb on + strand at 779.921 kb on - strand at 780.005 kb on + strand, within HER17_RS03430 at 780.006 kb on - strand, within HER17_RS03430 at 780.039 kb on - strand, within HER17_RS03430 at 780.139 kb on - strand, within HER17_RS03430 at 780.193 kb on + strand, within HER17_RS03430 at 780.193 kb on + strand, within HER17_RS03430 at 780.193 kb on + strand, within HER17_RS03430 at 780.233 kb on + strand, within HER17_RS03430 at 780.233 kb on + strand, within HER17_RS03430 at 780.233 kb on + strand, within HER17_RS03430 at 780.234 kb on - strand, within HER17_RS03430
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 777,615 + HER17_RS03415 0.88 +0.2 777,615 + HER17_RS03415 0.88 -0.1 777,703 + -0.2 777,780 + +0.2 777,834 - +0.2 777,834 - -1.6 777,843 + +0.2 777,843 + +0.1 777,843 + +0.1 777,843 + +0.7 777,844 - -0.5 777,844 - -1.0 777,844 - -0.5 777,844 - +0.2 777,847 - +0.8 777,863 + +0.0 777,885 + +0.8 777,886 - -0.5 777,886 - -0.2 777,886 - -0.0 777,895 - -0.1 777,913 + +0.6 777,914 - -0.6 777,919 - +0.2 777,967 + +0.1 778,085 + +0.1 778,085 + -0.6 778,085 + -0.4 778,086 - -0.6 778,086 - -0.6 778,086 - +0.7 778,088 + +0.8 778,089 - +0.1 778,089 - -0.2 778,089 - -0.5 778,089 - -0.5 778,106 + +0.0 778,259 - -1.0 778,261 - +0.6 778,285 - +0.1 778,332 - +0.2 778,338 - +0.7 778,347 + -0.3 778,347 + -0.3 778,348 - -0.8 778,501 - +0.1 778,536 + -0.9 778,537 - -0.1 778,552 - -0.4 778,552 - +1.1 778,552 - +0.7 778,552 - -2.0 778,794 + HER17_RS03420 0.29 -0.1 778,799 + HER17_RS03420 0.29 +0.5 778,800 - HER17_RS03420 0.30 -0.5 778,800 - HER17_RS03420 0.30 -0.7 778,871 - HER17_RS03420 0.40 -0.0 778,871 - HER17_RS03420 0.40 +1.2 778,871 - HER17_RS03420 0.40 +0.1 778,871 - HER17_RS03420 0.40 +0.3 778,871 - HER17_RS03420 0.40 +0.2 778,871 - HER17_RS03420 0.40 +0.1 778,965 + HER17_RS03420 0.53 -0.3 778,965 + HER17_RS03420 0.53 -0.1 778,966 - HER17_RS03420 0.54 -0.2 778,966 - HER17_RS03420 0.54 +0.0 779,082 + HER17_RS03420 0.70 +0.5 779,114 + HER17_RS03420 0.75 -1.5 779,159 - HER17_RS03420 0.82 +0.2 779,159 - HER17_RS03420 0.82 +0.3 779,354 + +0.2 779,489 + HER17_RS03425 0.34 +0.2 779,491 + HER17_RS03425 0.34 -0.3 779,491 + HER17_RS03425 0.34 +0.2 779,491 + HER17_RS03425 0.34 -0.4 779,492 - HER17_RS03425 0.34 -0.5 779,492 - HER17_RS03425 0.34 -0.7 779,504 + HER17_RS03425 0.37 -0.4 779,504 + HER17_RS03425 0.37 +0.4 779,505 - HER17_RS03425 0.37 +0.6 779,757 + -0.1 779,798 + +0.8 779,799 - +0.1 779,799 - +0.3 779,864 - -0.1 779,920 + +0.0 779,921 - -0.2 780,005 + HER17_RS03430 0.12 +0.5 780,006 - HER17_RS03430 0.12 +0.0 780,039 - HER17_RS03430 0.15 -0.8 780,139 - HER17_RS03430 0.23 +0.9 780,193 + HER17_RS03430 0.28 -0.6 780,193 + HER17_RS03430 0.28 +0.0 780,193 + HER17_RS03430 0.28 +0.5 780,233 + HER17_RS03430 0.31 -1.2 780,233 + HER17_RS03430 0.31 +0.0 780,233 + HER17_RS03430 0.31 -0.1 780,234 - HER17_RS03430 0.31 +0.0
Or see this region's nucleotide sequence