Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02085

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS02075 and HER17_RS02080 are separated by 17 nucleotidesHER17_RS02080 and HER17_RS02085 are separated by 16 nucleotidesHER17_RS02085 and HER17_RS02090 are separated by 14 nucleotidesHER17_RS02090 and HER17_RS02095 are separated by 17 nucleotides HER17_RS02075: HER17_RS02075 - 50S ribosomal protein L23, at 478,242 to 478,544 _RS02075 HER17_RS02080: HER17_RS02080 - 50S ribosomal protein L2, at 478,562 to 479,383 _RS02080 HER17_RS02085: HER17_RS02085 - 30S ribosomal protein S19, at 479,400 to 479,678 _RS02085 HER17_RS02090: HER17_RS02090 - 50S ribosomal protein L22, at 479,693 to 480,025 _RS02090 HER17_RS02095: HER17_RS02095 - 30S ribosomal protein S3, at 480,043 to 480,744 _RS02095 Position (kb) 479 480Strain fitness (log2 ratio) -1 0 1at 478.992 kb on + strand, within HER17_RS02080

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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478,992 + HER17_RS02080 0.52 -1.1

Or see this region's nucleotide sequence