Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01320

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01315 and HER17_RS01320 are separated by 331 nucleotidesHER17_RS01320 and HER17_RS01325 are separated by 48 nucleotides HER17_RS01315: HER17_RS01315 - hydroxymethylbilane synthase, at 301,734 to 302,675 _RS01315 HER17_RS01320: HER17_RS01320 - class I adenylate cyclase, at 303,007 to 305,565 _RS01320 HER17_RS01325: HER17_RS01325 - MFS transporter, at 305,614 to 306,786 _RS01325 Position (kb) 303 304 305 306Strain fitness (log2 ratio) -1 0 1 2at 302.710 kb on - strandat 302.710 kb on - strandat 302.796 kb on + strandat 302.796 kb on + strandat 302.797 kb on - strandat 302.797 kb on - strandat 302.847 kb on + strandat 302.848 kb on - strandat 302.848 kb on - strandat 302.848 kb on - strandat 302.851 kb on + strandat 302.851 kb on + strandat 302.851 kb on + strandat 302.851 kb on + strandat 302.852 kb on - strandat 302.852 kb on - strandat 302.852 kb on - strandat 302.852 kb on - strandat 302.852 kb on - strandat 302.867 kb on + strandat 302.897 kb on + strandat 302.940 kb on + strandat 302.940 kb on + strandat 303.010 kb on + strandat 303.010 kb on + strandat 303.010 kb on + strandat 303.324 kb on + strand, within HER17_RS01320at 304.219 kb on - strand, within HER17_RS01320at 304.273 kb on + strand, within HER17_RS01320at 304.274 kb on - strand, within HER17_RS01320at 304.274 kb on - strand, within HER17_RS01320at 304.274 kb on - strand, within HER17_RS01320at 304.305 kb on + strand, within HER17_RS01320at 304.352 kb on + strand, within HER17_RS01320at 304.359 kb on + strand, within HER17_RS01320at 304.359 kb on + strand, within HER17_RS01320at 304.360 kb on - strand, within HER17_RS01320at 304.363 kb on + strand, within HER17_RS01320at 304.364 kb on - strand, within HER17_RS01320at 304.364 kb on - strand, within HER17_RS01320at 304.399 kb on + strand, within HER17_RS01320at 304.399 kb on + strand, within HER17_RS01320at 304.400 kb on - strand, within HER17_RS01320at 304.400 kb on - strand, within HER17_RS01320at 304.405 kb on + strand, within HER17_RS01320at 304.405 kb on + strand, within HER17_RS01320at 304.406 kb on - strand, within HER17_RS01320at 304.406 kb on - strand, within HER17_RS01320at 304.406 kb on - strand, within HER17_RS01320at 304.406 kb on - strand, within HER17_RS01320at 304.406 kb on - strand, within HER17_RS01320at 304.408 kb on - strand, within HER17_RS01320at 304.456 kb on + strand, within HER17_RS01320at 304.457 kb on - strand, within HER17_RS01320at 304.457 kb on - strand, within HER17_RS01320at 304.458 kb on + strand, within HER17_RS01320at 304.459 kb on - strand, within HER17_RS01320at 304.459 kb on - strand, within HER17_RS01320at 304.465 kb on + strand, within HER17_RS01320at 304.492 kb on + strand, within HER17_RS01320at 304.528 kb on + strand, within HER17_RS01320at 304.529 kb on - strand, within HER17_RS01320at 304.533 kb on + strand, within HER17_RS01320at 304.718 kb on + strand, within HER17_RS01320at 304.718 kb on + strand, within HER17_RS01320at 304.719 kb on - strand, within HER17_RS01320at 304.749 kb on + strand, within HER17_RS01320at 304.750 kb on - strand, within HER17_RS01320at 304.787 kb on + strand, within HER17_RS01320at 304.787 kb on + strand, within HER17_RS01320at 304.787 kb on + strand, within HER17_RS01320at 304.788 kb on - strand, within HER17_RS01320at 304.788 kb on - strand, within HER17_RS01320at 304.788 kb on - strand, within HER17_RS01320at 304.799 kb on - strand, within HER17_RS01320at 305.010 kb on + strand, within HER17_RS01320at 305.011 kb on - strand, within HER17_RS01320at 305.128 kb on + strand, within HER17_RS01320at 305.129 kb on - strand, within HER17_RS01320at 305.277 kb on + strand, within HER17_RS01320at 305.314 kb on + strandat 305.315 kb on - strandat 305.391 kb on + strandat 305.392 kb on - strandat 305.396 kb on - strandat 305.445 kb on - strandat 305.509 kb on - strandat 305.567 kb on - strandat 305.567 kb on - strandat 305.577 kb on + strandat 305.609 kb on + strandat 305.609 kb on + strandat 305.609 kb on + strandat 305.609 kb on + strandat 305.609 kb on + strandat 305.609 kb on + strandat 305.610 kb on - strandat 305.610 kb on - strandat 305.610 kb on - strandat 305.610 kb on - strandat 305.610 kb on - strandat 305.610 kb on - strandat 305.676 kb on + strandat 305.677 kb on - strandat 305.679 kb on + strandat 305.679 kb on + strandat 305.680 kb on - strandat 305.680 kb on - strandat 305.680 kb on - strandat 305.680 kb on - strandat 305.680 kb on - strandat 305.704 kb on - strandat 305.704 kb on - strandat 305.791 kb on + strand, within HER17_RS01325at 305.792 kb on - strand, within HER17_RS01325at 305.818 kb on + strand, within HER17_RS01325at 305.819 kb on - strand, within HER17_RS01325at 305.819 kb on - strand, within HER17_RS01325at 305.820 kb on + strand, within HER17_RS01325at 305.820 kb on + strand, within HER17_RS01325at 305.894 kb on + strand, within HER17_RS01325at 305.894 kb on + strand, within HER17_RS01325at 305.894 kb on + strand, within HER17_RS01325at 305.895 kb on - strand, within HER17_RS01325at 305.897 kb on + strand, within HER17_RS01325at 305.897 kb on + strand, within HER17_RS01325at 305.897 kb on + strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.898 kb on - strand, within HER17_RS01325at 305.962 kb on + strand, within HER17_RS01325at 305.962 kb on + strand, within HER17_RS01325at 305.987 kb on + strand, within HER17_RS01325at 305.988 kb on - strand, within HER17_RS01325at 305.992 kb on - strand, within HER17_RS01325at 305.992 kb on - strand, within HER17_RS01325at 306.103 kb on + strand, within HER17_RS01325at 306.123 kb on + strand, within HER17_RS01325at 306.123 kb on + strand, within HER17_RS01325at 306.123 kb on + strand, within HER17_RS01325at 306.124 kb on - strand, within HER17_RS01325at 306.174 kb on + strand, within HER17_RS01325at 306.174 kb on + strand, within HER17_RS01325at 306.302 kb on + strand, within HER17_RS01325at 306.394 kb on + strand, within HER17_RS01325at 306.394 kb on + strand, within HER17_RS01325at 306.395 kb on - strand, within HER17_RS01325at 306.395 kb on - strand, within HER17_RS01325at 306.395 kb on - strand, within HER17_RS01325at 306.413 kb on + strand, within HER17_RS01325at 306.414 kb on - strand, within HER17_RS01325at 306.561 kb on + strand, within HER17_RS01325at 306.561 kb on + strand, within HER17_RS01325at 306.562 kb on - strand, within HER17_RS01325

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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302,710 - -1.1
302,710 - -0.0
302,796 + -0.3
302,796 + +1.1
302,797 - -0.4
302,797 - +0.3
302,847 + +0.6
302,848 - +0.1
302,848 - +0.4
302,848 - -0.8
302,851 + +0.7
302,851 + +0.4
302,851 + +0.1
302,851 + +1.4
302,852 - +0.6
302,852 - +0.2
302,852 - -0.7
302,852 - +0.0
302,852 - -0.6
302,867 + +0.9
302,897 + +0.4
302,940 + +0.5
302,940 + +0.6
303,010 + +0.3
303,010 + +0.0
303,010 + +0.1
303,324 + HER17_RS01320 0.12 +0.3
304,219 - HER17_RS01320 0.47 -0.9
304,273 + HER17_RS01320 0.49 -0.5
304,274 - HER17_RS01320 0.50 -0.1
304,274 - HER17_RS01320 0.50 +0.3
304,274 - HER17_RS01320 0.50 -0.5
304,305 + HER17_RS01320 0.51 -0.4
304,352 + HER17_RS01320 0.53 -0.7
304,359 + HER17_RS01320 0.53 +0.1
304,359 + HER17_RS01320 0.53 -0.4
304,360 - HER17_RS01320 0.53 +0.9
304,363 + HER17_RS01320 0.53 -1.3
304,364 - HER17_RS01320 0.53 -0.4
304,364 - HER17_RS01320 0.53 -0.9
304,399 + HER17_RS01320 0.54 -0.3
304,399 + HER17_RS01320 0.54 -0.4
304,400 - HER17_RS01320 0.54 -0.8
304,400 - HER17_RS01320 0.54 +0.4
304,405 + HER17_RS01320 0.55 +0.6
304,405 + HER17_RS01320 0.55 -0.5
304,406 - HER17_RS01320 0.55 +0.2
304,406 - HER17_RS01320 0.55 -0.3
304,406 - HER17_RS01320 0.55 -0.1
304,406 - HER17_RS01320 0.55 -0.2
304,406 - HER17_RS01320 0.55 -0.4
304,408 - HER17_RS01320 0.55 -0.2
304,456 + HER17_RS01320 0.57 -0.1
304,457 - HER17_RS01320 0.57 -0.4
304,457 - HER17_RS01320 0.57 -0.6
304,458 + HER17_RS01320 0.57 -0.4
304,459 - HER17_RS01320 0.57 -0.2
304,459 - HER17_RS01320 0.57 -0.6
304,465 + HER17_RS01320 0.57 -0.8
304,492 + HER17_RS01320 0.58 -0.8
304,528 + HER17_RS01320 0.59 -0.4
304,529 - HER17_RS01320 0.59 -0.4
304,533 + HER17_RS01320 0.60 -0.5
304,718 + HER17_RS01320 0.67 -0.7
304,718 + HER17_RS01320 0.67 -0.6
304,719 - HER17_RS01320 0.67 -1.5
304,749 + HER17_RS01320 0.68 -0.3
304,750 - HER17_RS01320 0.68 -0.1
304,787 + HER17_RS01320 0.70 -0.5
304,787 + HER17_RS01320 0.70 +0.4
304,787 + HER17_RS01320 0.70 -0.0
304,788 - HER17_RS01320 0.70 +0.0
304,788 - HER17_RS01320 0.70 -1.2
304,788 - HER17_RS01320 0.70 -0.9
304,799 - HER17_RS01320 0.70 -0.2
305,010 + HER17_RS01320 0.78 -0.7
305,011 - HER17_RS01320 0.78 +0.3
305,128 + HER17_RS01320 0.83 -1.0
305,129 - HER17_RS01320 0.83 +2.0
305,277 + HER17_RS01320 0.89 +0.3
305,314 + +1.4
305,315 - -0.6
305,391 + -0.7
305,392 - -0.4
305,396 - -1.4
305,445 - -1.2
305,509 - -0.2
305,567 - +1.0
305,567 - -0.2
305,577 + -0.0
305,609 + -0.5
305,609 + +0.2
305,609 + +1.2
305,609 + +0.4
305,609 + -0.3
305,609 + -0.2
305,610 - +0.3
305,610 - -0.2
305,610 - -0.7
305,610 - -1.1
305,610 - +2.3
305,610 - -1.1
305,676 + -0.7
305,677 - +0.2
305,679 + +0.6
305,679 + -0.2
305,680 - -0.0
305,680 - -1.0
305,680 - +0.2
305,680 - +0.1
305,680 - +0.0
305,704 - +0.6
305,704 - +0.1
305,791 + HER17_RS01325 0.15 -0.8
305,792 - HER17_RS01325 0.15 -0.1
305,818 + HER17_RS01325 0.17 +0.1
305,819 - HER17_RS01325 0.17 -0.3
305,819 - HER17_RS01325 0.17 -1.0
305,820 + HER17_RS01325 0.18 +0.7
305,820 + HER17_RS01325 0.18 -0.8
305,894 + HER17_RS01325 0.24 +0.2
305,894 + HER17_RS01325 0.24 +0.4
305,894 + HER17_RS01325 0.24 -0.5
305,895 - HER17_RS01325 0.24 -0.6
305,897 + HER17_RS01325 0.24 -0.3
305,897 + HER17_RS01325 0.24 -0.2
305,897 + HER17_RS01325 0.24 -0.0
305,898 - HER17_RS01325 0.24 +0.1
305,898 - HER17_RS01325 0.24 -0.5
305,898 - HER17_RS01325 0.24 -1.6
305,898 - HER17_RS01325 0.24 +0.4
305,898 - HER17_RS01325 0.24 -0.0
305,898 - HER17_RS01325 0.24 -0.2
305,898 - HER17_RS01325 0.24 -0.8
305,898 - HER17_RS01325 0.24 -0.3
305,962 + HER17_RS01325 0.30 +0.7
305,962 + HER17_RS01325 0.30 -1.0
305,987 + HER17_RS01325 0.32 -0.5
305,988 - HER17_RS01325 0.32 +0.1
305,992 - HER17_RS01325 0.32 +0.0
305,992 - HER17_RS01325 0.32 +0.5
306,103 + HER17_RS01325 0.42 +0.1
306,123 + HER17_RS01325 0.43 -0.2
306,123 + HER17_RS01325 0.43 +0.8
306,123 + HER17_RS01325 0.43 +0.2
306,124 - HER17_RS01325 0.43 +0.1
306,174 + HER17_RS01325 0.48 +0.5
306,174 + HER17_RS01325 0.48 -0.5
306,302 + HER17_RS01325 0.59 -0.2
306,394 + HER17_RS01325 0.66 -0.4
306,394 + HER17_RS01325 0.66 -0.4
306,395 - HER17_RS01325 0.67 +0.1
306,395 - HER17_RS01325 0.67 -0.3
306,395 - HER17_RS01325 0.67 +0.2
306,413 + HER17_RS01325 0.68 -0.5
306,414 - HER17_RS01325 0.68 -0.4
306,561 + HER17_RS01325 0.81 +0.1
306,561 + HER17_RS01325 0.81 -0.5
306,562 - HER17_RS01325 0.81 -0.3

Or see this region's nucleotide sequence