Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01145

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01140 and HER17_RS01145 are separated by 206 nucleotidesHER17_RS01145 and HER17_RS01150 are separated by 21 nucleotides HER17_RS01140: HER17_RS01140 - transcription termination factor Rho, at 265,648 to 266,907 _RS01140 HER17_RS01145: HER17_RS01145 - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 267,114 to 268,211 _RS01145 HER17_RS01150: HER17_RS01150 - ECA polysaccharide chain length modulation protein, at 268,233 to 269,279 _RS01150 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 266.906 kb on - strandat 266.932 kb on + strandat 266.977 kb on + strandat 266.978 kb on - strandat 266.978 kb on - strandat 266.978 kb on - strandat 266.978 kb on - strandat 267.004 kb on + strandat 267.062 kb on + strandat 267.062 kb on + strandat 267.062 kb on + strandat 267.062 kb on + strandat 267.062 kb on + strandat 267.062 kb on + strandat 267.062 kb on + strandat 267.062 kb on + strandat 267.063 kb on - strandat 267.063 kb on - strandat 267.063 kb on - strandat 267.063 kb on - strandat 267.063 kb on - strandat 267.063 kb on - strandat 267.063 kb on - strandat 267.063 kb on - strandat 267.064 kb on + strandat 267.064 kb on + strandat 267.065 kb on - strandat 267.065 kb on - strandat 267.065 kb on - strandat 267.065 kb on - strandat 267.065 kb on - strandat 267.065 kb on - strandat 267.082 kb on + strandat 267.082 kb on + strandat 267.082 kb on + strandat 267.083 kb on - strandat 267.095 kb on + strandat 267.096 kb on - strandat 267.121 kb on + strandat 267.121 kb on + strandat 267.128 kb on + strandat 267.143 kb on - strandat 267.228 kb on + strand, within HER17_RS01145at 267.229 kb on - strand, within HER17_RS01145at 267.229 kb on - strand, within HER17_RS01145at 267.269 kb on + strand, within HER17_RS01145at 267.269 kb on + strand, within HER17_RS01145at 267.270 kb on - strand, within HER17_RS01145at 267.270 kb on - strand, within HER17_RS01145at 267.270 kb on - strand, within HER17_RS01145at 267.279 kb on + strand, within HER17_RS01145at 267.296 kb on + strand, within HER17_RS01145at 267.297 kb on - strand, within HER17_RS01145at 267.297 kb on - strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.300 kb on + strand, within HER17_RS01145at 267.308 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.318 kb on + strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.319 kb on - strand, within HER17_RS01145at 267.320 kb on + strand, within HER17_RS01145at 267.320 kb on + strand, within HER17_RS01145at 267.320 kb on + strand, within HER17_RS01145at 267.321 kb on - strand, within HER17_RS01145at 267.321 kb on - strand, within HER17_RS01145at 267.321 kb on - strand, within HER17_RS01145at 267.339 kb on + strand, within HER17_RS01145at 267.364 kb on + strand, within HER17_RS01145at 267.365 kb on - strand, within HER17_RS01145at 267.368 kb on + strand, within HER17_RS01145at 267.470 kb on - strand, within HER17_RS01145at 267.573 kb on - strand, within HER17_RS01145at 267.573 kb on - strand, within HER17_RS01145at 267.573 kb on - strand, within HER17_RS01145at 267.646 kb on - strand, within HER17_RS01145at 267.659 kb on + strand, within HER17_RS01145at 267.659 kb on + strand, within HER17_RS01145at 267.660 kb on - strand, within HER17_RS01145at 267.703 kb on + strand, within HER17_RS01145at 267.703 kb on + strand, within HER17_RS01145at 267.704 kb on - strand, within HER17_RS01145at 267.704 kb on - strand, within HER17_RS01145at 267.704 kb on - strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.708 kb on + strand, within HER17_RS01145at 267.709 kb on - strand, within HER17_RS01145at 267.720 kb on - strand, within HER17_RS01145at 267.744 kb on + strand, within HER17_RS01145at 267.744 kb on + strand, within HER17_RS01145at 267.840 kb on - strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.896 kb on + strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.897 kb on - strand, within HER17_RS01145at 267.900 kb on + strand, within HER17_RS01145at 267.901 kb on - strand, within HER17_RS01145at 267.901 kb on - strand, within HER17_RS01145at 267.951 kb on - strand, within HER17_RS01145at 267.951 kb on - strand, within HER17_RS01145at 267.962 kb on - strand, within HER17_RS01145at 268.008 kb on - strand, within HER17_RS01145at 268.008 kb on - strand, within HER17_RS01145at 268.042 kb on + strand, within HER17_RS01145at 268.042 kb on + strand, within HER17_RS01145at 268.108 kb on + strandat 268.108 kb on + strandat 268.119 kb on + strandat 268.120 kb on - strandat 268.120 kb on - strandat 268.120 kb on - strandat 268.120 kb on - strandat 268.155 kb on - strandat 268.218 kb on - strandat 268.231 kb on + strandat 268.231 kb on + strandat 268.232 kb on - strandat 268.232 kb on - strandat 268.232 kb on - strandat 268.297 kb on + strandat 268.334 kb on - strandat 268.371 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.378 kb on - strand, within HER17_RS01150at 268.385 kb on + strand, within HER17_RS01150at 268.385 kb on + strand, within HER17_RS01150at 268.433 kb on + strand, within HER17_RS01150at 268.434 kb on - strand, within HER17_RS01150at 268.434 kb on - strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.450 kb on - strand, within HER17_RS01150at 268.450 kb on - strand, within HER17_RS01150at 268.473 kb on - strand, within HER17_RS01150at 268.521 kb on - strand, within HER17_RS01150at 268.521 kb on - strand, within HER17_RS01150at 268.536 kb on + strand, within HER17_RS01150at 268.566 kb on + strand, within HER17_RS01150at 268.567 kb on - strand, within HER17_RS01150at 268.567 kb on - strand, within HER17_RS01150at 268.603 kb on - strand, within HER17_RS01150at 268.603 kb on - strand, within HER17_RS01150at 268.605 kb on + strand, within HER17_RS01150at 268.605 kb on + strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.671 kb on - strand, within HER17_RS01150at 268.767 kb on + strand, within HER17_RS01150at 268.768 kb on - strand, within HER17_RS01150at 268.949 kb on + strand, within HER17_RS01150at 268.949 kb on + strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.952 kb on + strand, within HER17_RS01150at 268.970 kb on + strand, within HER17_RS01150at 269.067 kb on + strand, within HER17_RS01150at 269.079 kb on + strand, within HER17_RS01150at 269.079 kb on + strand, within HER17_RS01150at 269.148 kb on + strand, within HER17_RS01150at 269.149 kb on - strand, within HER17_RS01150at 269.155 kb on - strand, within HER17_RS01150

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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266,906 - +0.1
266,932 + -0.3
266,977 + -0.0
266,978 - -0.3
266,978 - -0.1
266,978 - +0.4
266,978 - +0.9
267,004 + -0.8
267,062 + +0.2
267,062 + -0.3
267,062 + -0.3
267,062 + -0.5
267,062 + +0.0
267,062 + -1.2
267,062 + -0.2
267,062 + -0.4
267,063 - -0.4
267,063 - +0.2
267,063 - -2.5
267,063 - +0.0
267,063 - -0.9
267,063 - +0.0
267,063 - -0.1
267,063 - +0.2
267,064 + -0.0
267,064 + -0.4
267,065 - -1.7
267,065 - -0.4
267,065 - +0.8
267,065 - +0.1
267,065 - +0.2
267,065 - +0.5
267,082 + +1.3
267,082 + -1.1
267,082 + +0.2
267,083 - -0.8
267,095 + -0.2
267,096 - +0.6
267,121 + -0.4
267,121 + -1.9
267,128 + -0.2
267,143 - +0.8
267,228 + HER17_RS01145 0.10 -0.1
267,229 - HER17_RS01145 0.10 +0.5
267,229 - HER17_RS01145 0.10 +0.7
267,269 + HER17_RS01145 0.14 +0.6
267,269 + HER17_RS01145 0.14 +0.7
267,270 - HER17_RS01145 0.14 +0.6
267,270 - HER17_RS01145 0.14 -0.2
267,270 - HER17_RS01145 0.14 +0.5
267,279 + HER17_RS01145 0.15 +0.2
267,296 + HER17_RS01145 0.17 -0.5
267,297 - HER17_RS01145 0.17 +0.1
267,297 - HER17_RS01145 0.17 +0.1
267,300 + HER17_RS01145 0.17 +0.2
267,300 + HER17_RS01145 0.17 -0.1
267,300 + HER17_RS01145 0.17 +0.2
267,300 + HER17_RS01145 0.17 -0.8
267,308 + HER17_RS01145 0.18 -1.6
267,318 + HER17_RS01145 0.19 +0.2
267,318 + HER17_RS01145 0.19 +0.5
267,318 + HER17_RS01145 0.19 -0.5
267,318 + HER17_RS01145 0.19 -0.1
267,318 + HER17_RS01145 0.19 -0.2
267,318 + HER17_RS01145 0.19 +0.3
267,318 + HER17_RS01145 0.19 +0.2
267,318 + HER17_RS01145 0.19 +0.0
267,318 + HER17_RS01145 0.19 -0.3
267,318 + HER17_RS01145 0.19 -0.2
267,319 - HER17_RS01145 0.19 +0.3
267,319 - HER17_RS01145 0.19 +0.4
267,319 - HER17_RS01145 0.19 -0.0
267,319 - HER17_RS01145 0.19 +0.9
267,319 - HER17_RS01145 0.19 +0.3
267,319 - HER17_RS01145 0.19 -0.0
267,319 - HER17_RS01145 0.19 +0.2
267,319 - HER17_RS01145 0.19 +0.3
267,319 - HER17_RS01145 0.19 +0.2
267,319 - HER17_RS01145 0.19 +0.6
267,319 - HER17_RS01145 0.19 -0.2
267,319 - HER17_RS01145 0.19 -0.6
267,319 - HER17_RS01145 0.19 +0.3
267,319 - HER17_RS01145 0.19 -0.3
267,319 - HER17_RS01145 0.19 -0.3
267,320 + HER17_RS01145 0.19 -0.8
267,320 + HER17_RS01145 0.19 +0.2
267,320 + HER17_RS01145 0.19 +0.1
267,321 - HER17_RS01145 0.19 -0.6
267,321 - HER17_RS01145 0.19 +0.4
267,321 - HER17_RS01145 0.19 -0.3
267,339 + HER17_RS01145 0.20 +0.5
267,364 + HER17_RS01145 0.23 +1.9
267,365 - HER17_RS01145 0.23 +1.0
267,368 + HER17_RS01145 0.23 +1.0
267,470 - HER17_RS01145 0.32 +0.4
267,573 - HER17_RS01145 0.42 -0.1
267,573 - HER17_RS01145 0.42 -0.5
267,573 - HER17_RS01145 0.42 -1.0
267,646 - HER17_RS01145 0.48 -0.7
267,659 + HER17_RS01145 0.50 +0.8
267,659 + HER17_RS01145 0.50 -0.7
267,660 - HER17_RS01145 0.50 +0.3
267,703 + HER17_RS01145 0.54 +0.0
267,703 + HER17_RS01145 0.54 -0.6
267,704 - HER17_RS01145 0.54 -0.4
267,704 - HER17_RS01145 0.54 -0.2
267,704 - HER17_RS01145 0.54 +0.1
267,708 + HER17_RS01145 0.54 +0.0
267,708 + HER17_RS01145 0.54 -0.3
267,708 + HER17_RS01145 0.54 -0.2
267,708 + HER17_RS01145 0.54 -0.5
267,708 + HER17_RS01145 0.54 -0.2
267,708 + HER17_RS01145 0.54 -0.1
267,709 - HER17_RS01145 0.54 +0.1
267,720 - HER17_RS01145 0.55 -0.9
267,744 + HER17_RS01145 0.57 -0.5
267,744 + HER17_RS01145 0.57 -0.5
267,840 - HER17_RS01145 0.66 -0.4
267,896 + HER17_RS01145 0.71 -0.7
267,896 + HER17_RS01145 0.71 +0.2
267,896 + HER17_RS01145 0.71 -1.0
267,896 + HER17_RS01145 0.71 -0.4
267,896 + HER17_RS01145 0.71 -0.2
267,896 + HER17_RS01145 0.71 -0.0
267,896 + HER17_RS01145 0.71 +0.0
267,897 - HER17_RS01145 0.71 +1.3
267,897 - HER17_RS01145 0.71 +1.9
267,897 - HER17_RS01145 0.71 +0.9
267,897 - HER17_RS01145 0.71 +0.4
267,900 + HER17_RS01145 0.72 +1.0
267,901 - HER17_RS01145 0.72 +0.4
267,901 - HER17_RS01145 0.72 +0.1
267,951 - HER17_RS01145 0.76 -0.2
267,951 - HER17_RS01145 0.76 -0.1
267,962 - HER17_RS01145 0.77 +0.6
268,008 - HER17_RS01145 0.81 -0.1
268,008 - HER17_RS01145 0.81 +0.0
268,042 + HER17_RS01145 0.85 -0.2
268,042 + HER17_RS01145 0.85 -0.6
268,108 + +0.9
268,108 + -0.3
268,119 + -0.0
268,120 - +0.9
268,120 - +0.6
268,120 - -0.1
268,120 - -0.3
268,155 - -0.3
268,218 - +0.1
268,231 + +0.4
268,231 + +0.3
268,232 - -0.4
268,232 - -0.7
268,232 - -2.6
268,297 + +0.4
268,334 - -0.5
268,371 + HER17_RS01150 0.13 +0.4
268,377 + HER17_RS01150 0.14 -0.0
268,377 + HER17_RS01150 0.14 -0.3
268,377 + HER17_RS01150 0.14 -0.8
268,378 - HER17_RS01150 0.14 +1.1
268,385 + HER17_RS01150 0.15 +0.2
268,385 + HER17_RS01150 0.15 +0.3
268,433 + HER17_RS01150 0.19 -0.2
268,434 - HER17_RS01150 0.19 -0.6
268,434 - HER17_RS01150 0.19 -0.9
268,438 + HER17_RS01150 0.20 -0.3
268,438 + HER17_RS01150 0.20 -0.7
268,438 + HER17_RS01150 0.20 -0.1
268,438 + HER17_RS01150 0.20 -0.8
268,439 - HER17_RS01150 0.20 +0.4
268,439 - HER17_RS01150 0.20 -0.0
268,439 - HER17_RS01150 0.20 -0.7
268,450 - HER17_RS01150 0.21 +0.3
268,450 - HER17_RS01150 0.21 -0.5
268,473 - HER17_RS01150 0.23 -0.3
268,521 - HER17_RS01150 0.28 -1.3
268,521 - HER17_RS01150 0.28 +0.0
268,536 + HER17_RS01150 0.29 +0.0
268,566 + HER17_RS01150 0.32 +0.5
268,567 - HER17_RS01150 0.32 -0.3
268,567 - HER17_RS01150 0.32 -2.2
268,603 - HER17_RS01150 0.35 -0.1
268,603 - HER17_RS01150 0.35 +0.4
268,605 + HER17_RS01150 0.36 +0.6
268,605 + HER17_RS01150 0.36 -0.6
268,606 - HER17_RS01150 0.36 -0.0
268,606 - HER17_RS01150 0.36 -0.7
268,606 - HER17_RS01150 0.36 -0.0
268,606 - HER17_RS01150 0.36 -1.0
268,607 + HER17_RS01150 0.36 +0.3
268,607 + HER17_RS01150 0.36 +0.2
268,607 + HER17_RS01150 0.36 -0.1
268,607 + HER17_RS01150 0.36 -0.0
268,608 - HER17_RS01150 0.36 -0.1
268,608 - HER17_RS01150 0.36 -0.1
268,608 - HER17_RS01150 0.36 -0.8
268,608 - HER17_RS01150 0.36 -1.0
268,670 + HER17_RS01150 0.42 -0.6
268,670 + HER17_RS01150 0.42 +0.2
268,670 + HER17_RS01150 0.42 +0.6
268,671 - HER17_RS01150 0.42 -0.3
268,767 + HER17_RS01150 0.51 +0.1
268,768 - HER17_RS01150 0.51 +1.2
268,949 + HER17_RS01150 0.68 +0.2
268,949 + HER17_RS01150 0.68 +0.3
268,950 - HER17_RS01150 0.68 -0.8
268,950 - HER17_RS01150 0.68 +0.4
268,950 - HER17_RS01150 0.68 -1.0
268,950 - HER17_RS01150 0.68 -0.5
268,952 + HER17_RS01150 0.69 +0.0
268,970 + HER17_RS01150 0.70 +0.5
269,067 + HER17_RS01150 0.80 +0.3
269,079 + HER17_RS01150 0.81 +0.4
269,079 + HER17_RS01150 0.81 -1.1
269,148 + HER17_RS01150 0.87 -0.2
269,149 - HER17_RS01150 0.87 +0.1
269,155 - HER17_RS01150 0.88 +0.2

Or see this region's nucleotide sequence