Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01130 and HER17_RS01135 are separated by 118 nucleotides HER17_RS01135 and HER17_RS01140 are separated by 495 nucleotides HER17_RS01140 and HER17_RS01145 are separated by 206 nucleotides
HER17_RS01130: HER17_RS01130 - ATP-dependent RNA helicase RhlB, at 263,418 to 264,707
_RS01130
HER17_RS01135: HER17_RS01135 - thioredoxin TrxA, at 264,826 to 265,152
_RS01135
HER17_RS01140: HER17_RS01140 - transcription termination factor Rho, at 265,648 to 266,907
_RS01140
HER17_RS01145: HER17_RS01145 - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 267,114 to 268,211
_RS01145
Position (kb) 265
266
267 Strain fitness (log2 ratio) -2
-1
0
1
2 at 264.690 kb on + strand at 264.690 kb on + strand at 264.707 kb on + strand at 264.708 kb on - strand at 264.715 kb on + strand at 264.721 kb on - strand at 264.727 kb on + strand at 264.727 kb on + strand at 264.727 kb on + strand at 264.731 kb on + strand at 264.731 kb on + strand at 264.732 kb on - strand at 264.732 kb on - strand at 264.749 kb on + strand at 264.761 kb on + strand at 264.761 kb on + strand at 264.761 kb on + strand at 264.761 kb on + strand at 264.762 kb on - strand at 264.762 kb on - strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.789 kb on - strand at 264.789 kb on - strand at 264.821 kb on - strand at 264.839 kb on + strand at 264.839 kb on + strand at 264.839 kb on + strand at 264.894 kb on + strand, within HER17_RS01135 at 264.948 kb on + strand, within HER17_RS01135 at 264.948 kb on + strand, within HER17_RS01135 at 265.036 kb on + strand, within HER17_RS01135 at 265.037 kb on - strand, within HER17_RS01135 at 265.056 kb on + strand, within HER17_RS01135 at 265.056 kb on + strand, within HER17_RS01135 at 265.057 kb on - strand, within HER17_RS01135 at 265.057 kb on - strand, within HER17_RS01135 at 265.154 kb on + strand at 265.154 kb on + strand at 265.425 kb on + strand at 265.428 kb on + strand at 265.428 kb on + strand at 265.434 kb on + strand at 265.434 kb on + strand at 265.439 kb on + strand at 265.439 kb on + strand at 265.449 kb on + strand at 265.449 kb on + strand at 265.493 kb on + strand at 265.519 kb on + strand at 265.519 kb on + strand at 265.570 kb on + strand at 265.570 kb on + strand at 265.610 kb on + strand at 265.610 kb on + strand at 265.632 kb on + strand at 266.906 kb on - strand at 266.932 kb on + strand at 266.977 kb on + strand at 266.978 kb on - strand at 266.978 kb on - strand at 266.978 kb on - strand at 266.978 kb on - strand at 267.004 kb on + strand at 267.062 kb on + strand at 267.062 kb on + strand at 267.062 kb on + strand at 267.062 kb on + strand at 267.062 kb on + strand at 267.062 kb on + strand at 267.062 kb on + strand at 267.062 kb on + strand at 267.063 kb on - strand at 267.063 kb on - strand at 267.063 kb on - strand at 267.063 kb on - strand at 267.063 kb on - strand at 267.063 kb on - strand at 267.063 kb on - strand at 267.063 kb on - strand at 267.064 kb on + strand at 267.064 kb on + strand at 267.065 kb on - strand at 267.065 kb on - strand at 267.065 kb on - strand at 267.065 kb on - strand at 267.065 kb on - strand at 267.065 kb on - strand at 267.082 kb on + strand at 267.082 kb on + strand at 267.082 kb on + strand at 267.083 kb on - strand at 267.095 kb on + strand at 267.096 kb on - strand at 267.121 kb on + strand at 267.121 kb on + strand at 267.128 kb on + strand at 267.143 kb on - strand at 267.228 kb on + strand, within HER17_RS01145 at 267.229 kb on - strand, within HER17_RS01145 at 267.229 kb on - strand, within HER17_RS01145 at 267.269 kb on + strand, within HER17_RS01145 at 267.269 kb on + strand, within HER17_RS01145 at 267.270 kb on - strand, within HER17_RS01145 at 267.270 kb on - strand, within HER17_RS01145 at 267.270 kb on - strand, within HER17_RS01145 at 267.279 kb on + strand, within HER17_RS01145 at 267.296 kb on + strand, within HER17_RS01145 at 267.297 kb on - strand, within HER17_RS01145 at 267.297 kb on - strand, within HER17_RS01145 at 267.300 kb on + strand, within HER17_RS01145 at 267.300 kb on + strand, within HER17_RS01145 at 267.300 kb on + strand, within HER17_RS01145 at 267.300 kb on + strand, within HER17_RS01145 at 267.308 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.318 kb on + strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.319 kb on - strand, within HER17_RS01145 at 267.320 kb on + strand, within HER17_RS01145 at 267.320 kb on + strand, within HER17_RS01145 at 267.320 kb on + strand, within HER17_RS01145 at 267.321 kb on - strand, within HER17_RS01145 at 267.321 kb on - strand, within HER17_RS01145 at 267.321 kb on - strand, within HER17_RS01145 at 267.339 kb on + strand, within HER17_RS01145 at 267.364 kb on + strand, within HER17_RS01145 at 267.365 kb on - strand, within HER17_RS01145 at 267.368 kb on + strand, within HER17_RS01145 at 267.470 kb on - strand, within HER17_RS01145 at 267.573 kb on - strand, within HER17_RS01145 at 267.573 kb on - strand, within HER17_RS01145 at 267.573 kb on - strand, within HER17_RS01145 at 267.646 kb on - strand, within HER17_RS01145 at 267.659 kb on + strand, within HER17_RS01145 at 267.659 kb on + strand, within HER17_RS01145 at 267.660 kb on - strand, within HER17_RS01145 at 267.703 kb on + strand, within HER17_RS01145 at 267.703 kb on + strand, within HER17_RS01145 at 267.704 kb on - strand, within HER17_RS01145 at 267.704 kb on - strand, within HER17_RS01145 at 267.704 kb on - strand, within HER17_RS01145 at 267.708 kb on + strand, within HER17_RS01145 at 267.708 kb on + strand, within HER17_RS01145 at 267.708 kb on + strand, within HER17_RS01145 at 267.708 kb on + strand, within HER17_RS01145 at 267.708 kb on + strand, within HER17_RS01145 at 267.708 kb on + strand, within HER17_RS01145 at 267.709 kb on - strand, within HER17_RS01145 at 267.720 kb on - strand, within HER17_RS01145 at 267.744 kb on + strand, within HER17_RS01145 at 267.744 kb on + strand, within HER17_RS01145 at 267.840 kb on - strand, within HER17_RS01145 at 267.896 kb on + strand, within HER17_RS01145 at 267.896 kb on + strand, within HER17_RS01145 at 267.896 kb on + strand, within HER17_RS01145 at 267.896 kb on + strand, within HER17_RS01145 at 267.896 kb on + strand, within HER17_RS01145 at 267.896 kb on + strand, within HER17_RS01145 at 267.896 kb on + strand, within HER17_RS01145 at 267.897 kb on - strand, within HER17_RS01145 at 267.897 kb on - strand, within HER17_RS01145 at 267.897 kb on - strand, within HER17_RS01145 at 267.897 kb on - strand, within HER17_RS01145 at 267.900 kb on + strand, within HER17_RS01145 at 267.901 kb on - strand, within HER17_RS01145 at 267.901 kb on - strand, within HER17_RS01145
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 264,690 + +0.4 264,690 + +0.2 264,707 + -0.4 264,708 - -0.0 264,715 + +0.3 264,721 - -0.0 264,727 + -1.2 264,727 + +0.6 264,727 + +1.0 264,731 + +0.1 264,731 + -0.7 264,732 - -0.4 264,732 - +0.5 264,749 + +0.9 264,761 + -0.4 264,761 + +0.7 264,761 + +0.2 264,761 + -0.4 264,762 - +0.2 264,762 - +0.0 264,788 + +0.4 264,788 + +0.9 264,789 - -0.4 264,789 - -0.2 264,821 - +0.4 264,839 + +0.1 264,839 + -0.3 264,839 + +0.1 264,894 + HER17_RS01135 0.21 -0.4 264,948 + HER17_RS01135 0.37 +0.5 264,948 + HER17_RS01135 0.37 -0.5 265,036 + HER17_RS01135 0.64 +1.2 265,037 - HER17_RS01135 0.65 +1.1 265,056 + HER17_RS01135 0.70 +0.4 265,056 + HER17_RS01135 0.70 -0.4 265,057 - HER17_RS01135 0.71 +0.2 265,057 - HER17_RS01135 0.71 +2.0 265,154 + +0.3 265,154 + +0.0 265,425 + -0.3 265,428 + +0.6 265,428 + -0.1 265,434 + -0.3 265,434 + +0.1 265,439 + +0.8 265,439 + -0.1 265,449 + +0.0 265,449 + +0.9 265,493 + +0.3 265,519 + -0.5 265,519 + +0.1 265,570 + +0.7 265,570 + +1.3 265,610 + +0.3 265,610 + +0.6 265,632 + -1.3 266,906 - +0.1 266,932 + -0.3 266,977 + -0.0 266,978 - -0.3 266,978 - -0.1 266,978 - +0.4 266,978 - +0.9 267,004 + -0.8 267,062 + +0.2 267,062 + -0.3 267,062 + -0.3 267,062 + -0.5 267,062 + +0.0 267,062 + -1.2 267,062 + -0.2 267,062 + -0.4 267,063 - -0.4 267,063 - +0.2 267,063 - -2.5 267,063 - +0.0 267,063 - -0.9 267,063 - +0.0 267,063 - -0.1 267,063 - +0.2 267,064 + -0.0 267,064 + -0.4 267,065 - -1.7 267,065 - -0.4 267,065 - +0.8 267,065 - +0.1 267,065 - +0.2 267,065 - +0.5 267,082 + +1.3 267,082 + -1.1 267,082 + +0.2 267,083 - -0.8 267,095 + -0.2 267,096 - +0.6 267,121 + -0.4 267,121 + -1.9 267,128 + -0.2 267,143 - +0.8 267,228 + HER17_RS01145 0.10 -0.1 267,229 - HER17_RS01145 0.10 +0.5 267,229 - HER17_RS01145 0.10 +0.7 267,269 + HER17_RS01145 0.14 +0.6 267,269 + HER17_RS01145 0.14 +0.7 267,270 - HER17_RS01145 0.14 +0.6 267,270 - HER17_RS01145 0.14 -0.2 267,270 - HER17_RS01145 0.14 +0.5 267,279 + HER17_RS01145 0.15 +0.2 267,296 + HER17_RS01145 0.17 -0.5 267,297 - HER17_RS01145 0.17 +0.1 267,297 - HER17_RS01145 0.17 +0.1 267,300 + HER17_RS01145 0.17 +0.2 267,300 + HER17_RS01145 0.17 -0.1 267,300 + HER17_RS01145 0.17 +0.2 267,300 + HER17_RS01145 0.17 -0.8 267,308 + HER17_RS01145 0.18 -1.6 267,318 + HER17_RS01145 0.19 +0.2 267,318 + HER17_RS01145 0.19 +0.5 267,318 + HER17_RS01145 0.19 -0.5 267,318 + HER17_RS01145 0.19 -0.1 267,318 + HER17_RS01145 0.19 -0.2 267,318 + HER17_RS01145 0.19 +0.3 267,318 + HER17_RS01145 0.19 +0.2 267,318 + HER17_RS01145 0.19 +0.0 267,318 + HER17_RS01145 0.19 -0.3 267,318 + HER17_RS01145 0.19 -0.2 267,319 - HER17_RS01145 0.19 +0.3 267,319 - HER17_RS01145 0.19 +0.4 267,319 - HER17_RS01145 0.19 -0.0 267,319 - HER17_RS01145 0.19 +0.9 267,319 - HER17_RS01145 0.19 +0.3 267,319 - HER17_RS01145 0.19 -0.0 267,319 - HER17_RS01145 0.19 +0.2 267,319 - HER17_RS01145 0.19 +0.3 267,319 - HER17_RS01145 0.19 +0.2 267,319 - HER17_RS01145 0.19 +0.6 267,319 - HER17_RS01145 0.19 -0.2 267,319 - HER17_RS01145 0.19 -0.6 267,319 - HER17_RS01145 0.19 +0.3 267,319 - HER17_RS01145 0.19 -0.3 267,319 - HER17_RS01145 0.19 -0.3 267,320 + HER17_RS01145 0.19 -0.8 267,320 + HER17_RS01145 0.19 +0.2 267,320 + HER17_RS01145 0.19 +0.1 267,321 - HER17_RS01145 0.19 -0.6 267,321 - HER17_RS01145 0.19 +0.4 267,321 - HER17_RS01145 0.19 -0.3 267,339 + HER17_RS01145 0.20 +0.5 267,364 + HER17_RS01145 0.23 +1.9 267,365 - HER17_RS01145 0.23 +1.0 267,368 + HER17_RS01145 0.23 +1.0 267,470 - HER17_RS01145 0.32 +0.4 267,573 - HER17_RS01145 0.42 -0.1 267,573 - HER17_RS01145 0.42 -0.5 267,573 - HER17_RS01145 0.42 -1.0 267,646 - HER17_RS01145 0.48 -0.7 267,659 + HER17_RS01145 0.50 +0.8 267,659 + HER17_RS01145 0.50 -0.7 267,660 - HER17_RS01145 0.50 +0.3 267,703 + HER17_RS01145 0.54 +0.0 267,703 + HER17_RS01145 0.54 -0.6 267,704 - HER17_RS01145 0.54 -0.4 267,704 - HER17_RS01145 0.54 -0.2 267,704 - HER17_RS01145 0.54 +0.1 267,708 + HER17_RS01145 0.54 +0.0 267,708 + HER17_RS01145 0.54 -0.3 267,708 + HER17_RS01145 0.54 -0.2 267,708 + HER17_RS01145 0.54 -0.5 267,708 + HER17_RS01145 0.54 -0.2 267,708 + HER17_RS01145 0.54 -0.1 267,709 - HER17_RS01145 0.54 +0.1 267,720 - HER17_RS01145 0.55 -0.9 267,744 + HER17_RS01145 0.57 -0.5 267,744 + HER17_RS01145 0.57 -0.5 267,840 - HER17_RS01145 0.66 -0.4 267,896 + HER17_RS01145 0.71 -0.7 267,896 + HER17_RS01145 0.71 +0.2 267,896 + HER17_RS01145 0.71 -1.0 267,896 + HER17_RS01145 0.71 -0.4 267,896 + HER17_RS01145 0.71 -0.2 267,896 + HER17_RS01145 0.71 -0.0 267,896 + HER17_RS01145 0.71 +0.0 267,897 - HER17_RS01145 0.71 +1.3 267,897 - HER17_RS01145 0.71 +1.9 267,897 - HER17_RS01145 0.71 +0.9 267,897 - HER17_RS01145 0.71 +0.4 267,900 + HER17_RS01145 0.72 +1.0 267,901 - HER17_RS01145 0.72 +0.4 267,901 - HER17_RS01145 0.72 +0.1
Or see this region's nucleotide sequence