Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00835 and HER17_RS00840 are separated by 119 nucleotides HER17_RS00840 and HER17_RS00845 are separated by 134 nucleotides HER17_RS00845 and HER17_RS00850 are separated by 145 nucleotides
HER17_RS00835: HER17_RS00835 - septal ring assembly protein ZapB, at 195,542 to 195,781
_RS00835
HER17_RS00840: HER17_RS00840 - ribonuclease E activity regulator RraA, at 195,901 to 196,386
_RS00840
HER17_RS00845: HER17_RS00845 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 196,521 to 197,438
_RS00845
HER17_RS00850: HER17_RS00850 - HslU--HslV peptidase ATPase subunit, at 197,584 to 198,915
_RS00850
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.596 kb on - strand, within HER17_RS00835 at 195.779 kb on + strand at 195.830 kb on + strand at 195.831 kb on - strand at 195.831 kb on - strand at 195.877 kb on - strand at 195.899 kb on + strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.902 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.934 kb on - strand at 195.943 kb on - strand at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 196.300 kb on - strand, within HER17_RS00840 at 196.314 kb on + strand, within HER17_RS00840 at 196.315 kb on - strand, within HER17_RS00840 at 196.356 kb on + strand at 196.357 kb on - strand at 196.374 kb on + strand at 196.380 kb on - strand at 196.380 kb on - strand at 196.386 kb on + strand at 196.392 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.423 kb on + strand at 196.423 kb on + strand at 196.424 kb on - strand at 196.424 kb on - strand at 196.480 kb on + strand at 196.481 kb on - strand at 196.481 kb on - strand at 196.522 kb on + strand at 196.530 kb on + strand at 196.531 kb on - strand at 196.630 kb on + strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.696 kb on + strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.753 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.863 kb on + strand, within HER17_RS00845 at 196.863 kb on + strand, within HER17_RS00845 at 196.885 kb on - strand, within HER17_RS00845 at 196.922 kb on - strand, within HER17_RS00845 at 196.922 kb on - strand, within HER17_RS00845 at 196.924 kb on + strand, within HER17_RS00845 at 196.924 kb on + strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.940 kb on + strand, within HER17_RS00845 at 196.987 kb on + strand, within HER17_RS00845 at 196.987 kb on + strand, within HER17_RS00845 at 196.993 kb on + strand, within HER17_RS00845 at 196.994 kb on - strand, within HER17_RS00845 at 197.000 kb on + strand, within HER17_RS00845 at 197.001 kb on - strand, within HER17_RS00845 at 197.012 kb on + strand, within HER17_RS00845 at 197.013 kb on - strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.066 kb on + strand, within HER17_RS00845 at 197.066 kb on + strand, within HER17_RS00845 at 197.067 kb on - strand, within HER17_RS00845 at 197.322 kb on - strand, within HER17_RS00845 at 197.430 kb on + strand at 197.488 kb on - strand at 197.489 kb on + strand at 197.585 kb on + strand at 197.587 kb on + strand at 197.588 kb on - strand at 197.588 kb on - strand at 197.588 kb on - strand at 197.588 kb on - strand at 197.592 kb on + strand at 197.593 kb on - strand at 197.618 kb on - strand at 197.618 kb on - strand at 197.620 kb on + strand at 197.620 kb on + strand at 197.620 kb on + strand at 197.621 kb on - strand at 197.621 kb on - strand at 197.621 kb on - strand at 197.621 kb on - strand at 197.637 kb on + strand at 197.637 kb on + strand at 197.637 kb on + strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.642 kb on - strand at 197.642 kb on - strand at 197.645 kb on + strand at 197.645 kb on + strand at 197.646 kb on - strand at 197.646 kb on - strand at 197.646 kb on - strand at 197.693 kb on + strand at 197.694 kb on - strand at 197.728 kb on - strand, within HER17_RS00850 at 197.749 kb on - strand, within HER17_RS00850 at 197.853 kb on - strand, within HER17_RS00850 at 197.927 kb on - strand, within HER17_RS00850 at 198.030 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 195,596 - HER17_RS00835 0.23 +0.4 195,779 + -0.1 195,830 + -0.4 195,831 - +1.6 195,831 - +0.4 195,877 - +1.2 195,899 + -0.4 195,900 - -0.5 195,900 - -0.1 195,900 - -0.4 195,902 + -0.9 195,933 + +0.5 195,933 + +0.1 195,933 + +0.7 195,933 + -0.1 195,934 - -0.3 195,943 - -0.2 195,953 + HER17_RS00840 0.11 -0.2 195,953 + HER17_RS00840 0.11 +0.9 195,953 + HER17_RS00840 0.11 -2.3 196,300 - HER17_RS00840 0.82 +0.5 196,314 + HER17_RS00840 0.85 +1.0 196,315 - HER17_RS00840 0.85 -0.8 196,356 + -1.4 196,357 - -1.0 196,374 + +0.0 196,380 - -0.2 196,380 - -1.0 196,386 + -0.7 196,392 + +0.3 196,421 + +0.9 196,421 + +0.3 196,421 + -0.3 196,421 + -1.2 196,421 + -0.5 196,422 - +1.2 196,422 - +0.3 196,422 - +0.5 196,422 - +0.6 196,422 - +0.2 196,422 - +0.1 196,422 - +0.2 196,423 + -0.3 196,423 + -1.4 196,424 - +1.3 196,424 - +0.6 196,480 + +0.4 196,481 - +0.2 196,481 - -0.1 196,522 + +0.7 196,530 + -0.7 196,531 - -0.4 196,630 + HER17_RS00845 0.12 +0.8 196,631 - HER17_RS00845 0.12 +0.4 196,631 - HER17_RS00845 0.12 +0.3 196,631 - HER17_RS00845 0.12 -0.5 196,696 + HER17_RS00845 0.19 -0.1 196,697 - HER17_RS00845 0.19 +0.6 196,697 - HER17_RS00845 0.19 +1.5 196,697 - HER17_RS00845 0.19 -0.4 196,697 - HER17_RS00845 0.19 +0.2 196,753 + HER17_RS00845 0.25 -0.1 196,808 + HER17_RS00845 0.31 +0.1 196,808 + HER17_RS00845 0.31 -0.5 196,808 + HER17_RS00845 0.31 +0.3 196,863 + HER17_RS00845 0.37 +0.9 196,863 + HER17_RS00845 0.37 -0.0 196,885 - HER17_RS00845 0.40 +0.0 196,922 - HER17_RS00845 0.44 +0.6 196,922 - HER17_RS00845 0.44 +0.2 196,924 + HER17_RS00845 0.44 +0.2 196,924 + HER17_RS00845 0.44 -0.2 196,925 - HER17_RS00845 0.44 +0.0 196,925 - HER17_RS00845 0.44 +0.1 196,925 - HER17_RS00845 0.44 -0.3 196,940 + HER17_RS00845 0.46 +0.4 196,987 + HER17_RS00845 0.51 +1.2 196,987 + HER17_RS00845 0.51 -1.2 196,993 + HER17_RS00845 0.51 +0.2 196,994 - HER17_RS00845 0.52 -1.6 197,000 + HER17_RS00845 0.52 +0.7 197,001 - HER17_RS00845 0.52 +0.0 197,012 + HER17_RS00845 0.53 -0.0 197,013 - HER17_RS00845 0.54 -0.2 197,014 + HER17_RS00845 0.54 +0.8 197,014 + HER17_RS00845 0.54 -0.7 197,014 + HER17_RS00845 0.54 -0.8 197,014 + HER17_RS00845 0.54 -0.2 197,015 - HER17_RS00845 0.54 -0.0 197,015 - HER17_RS00845 0.54 +0.4 197,015 - HER17_RS00845 0.54 -0.3 197,015 - HER17_RS00845 0.54 -0.4 197,015 - HER17_RS00845 0.54 +0.9 197,015 - HER17_RS00845 0.54 +0.1 197,066 + HER17_RS00845 0.59 +0.4 197,066 + HER17_RS00845 0.59 +0.4 197,067 - HER17_RS00845 0.59 +0.1 197,322 - HER17_RS00845 0.87 +0.1 197,430 + +0.7 197,488 - -0.2 197,489 + -0.1 197,585 + +2.3 197,587 + +0.7 197,588 - -0.2 197,588 - +1.1 197,588 - -0.2 197,588 - +0.6 197,592 + -1.0 197,593 - +0.4 197,618 - +1.0 197,618 - -0.5 197,620 + -0.1 197,620 + -0.4 197,620 + -1.0 197,621 - +0.4 197,621 - +1.4 197,621 - +0.0 197,621 - +0.1 197,637 + +0.0 197,637 + -0.4 197,637 + +0.9 197,638 - -0.1 197,638 - -0.8 197,638 - -0.0 197,638 - -2.5 197,638 - -0.3 197,642 - -0.7 197,642 - -0.5 197,645 + +1.5 197,645 + -0.6 197,646 - -0.4 197,646 - +0.1 197,646 - -0.2 197,693 + -0.3 197,694 - -0.5 197,728 - HER17_RS00850 0.11 -0.0 197,749 - HER17_RS00850 0.12 +0.7 197,853 - HER17_RS00850 0.20 -0.0 197,927 - HER17_RS00850 0.26 -0.0 198,030 + HER17_RS00850 0.33 +0.2 198,312 + HER17_RS00850 0.55 -0.7 198,312 + HER17_RS00850 0.55 -0.3 198,312 + HER17_RS00850 0.55 -1.3 198,312 + HER17_RS00850 0.55 +0.8 198,312 + HER17_RS00850 0.55 +0.5 198,312 + HER17_RS00850 0.55 +1.0 198,313 - HER17_RS00850 0.55 +1.0 198,313 - HER17_RS00850 0.55 -2.2 198,313 - HER17_RS00850 0.55 +0.6 198,313 - HER17_RS00850 0.55 -1.2
Or see this region's nucleotide sequence