Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00340 and HER17_RS00345 are separated by 41 nucleotides HER17_RS00345 and HER17_RS00350 are separated by 66 nucleotides
HER17_RS00340: HER17_RS00340 - hypothetical protein, at 77,676 to 78,653
_RS00340
HER17_RS00345: HER17_RS00345 - ketoacyl-ACP synthase III, at 78,695 to 79,675
_RS00345
HER17_RS00350: HER17_RS00350 - cellulose biosynthesis protein BcsC, at 79,742 to 83,311
_RS00350
Position (kb) 78
79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 77.732 kb on - strand at 77.758 kb on + strand at 77.758 kb on + strand at 77.764 kb on + strand at 77.852 kb on + strand, within HER17_RS00340 at 77.879 kb on - strand, within HER17_RS00340 at 77.879 kb on - strand, within HER17_RS00340 at 77.937 kb on - strand, within HER17_RS00340 at 77.941 kb on + strand, within HER17_RS00340 at 77.941 kb on + strand, within HER17_RS00340 at 77.941 kb on + strand, within HER17_RS00340 at 78.075 kb on + strand, within HER17_RS00340 at 78.075 kb on + strand, within HER17_RS00340 at 78.075 kb on + strand, within HER17_RS00340 at 78.076 kb on - strand, within HER17_RS00340 at 78.102 kb on + strand, within HER17_RS00340 at 78.223 kb on - strand, within HER17_RS00340 at 78.224 kb on + strand, within HER17_RS00340 at 78.262 kb on - strand, within HER17_RS00340 at 78.296 kb on - strand, within HER17_RS00340 at 78.299 kb on + strand, within HER17_RS00340 at 78.323 kb on + strand, within HER17_RS00340 at 78.341 kb on - strand, within HER17_RS00340 at 78.341 kb on - strand, within HER17_RS00340 at 78.341 kb on - strand, within HER17_RS00340 at 78.386 kb on + strand, within HER17_RS00340 at 78.390 kb on + strand, within HER17_RS00340 at 78.390 kb on + strand, within HER17_RS00340 at 78.474 kb on + strand, within HER17_RS00340 at 78.475 kb on - strand, within HER17_RS00340 at 78.652 kb on - strand at 78.654 kb on + strand at 78.726 kb on + strand at 78.727 kb on - strand at 78.738 kb on + strand at 78.738 kb on + strand at 78.804 kb on + strand, within HER17_RS00345 at 78.805 kb on - strand, within HER17_RS00345 at 78.807 kb on + strand, within HER17_RS00345 at 78.905 kb on - strand, within HER17_RS00345 at 79.029 kb on - strand, within HER17_RS00345 at 79.034 kb on - strand, within HER17_RS00345 at 79.060 kb on + strand, within HER17_RS00345 at 79.060 kb on + strand, within HER17_RS00345 at 79.078 kb on - strand, within HER17_RS00345 at 79.137 kb on - strand, within HER17_RS00345 at 79.137 kb on - strand, within HER17_RS00345 at 79.150 kb on + strand, within HER17_RS00345 at 79.150 kb on + strand, within HER17_RS00345 at 79.151 kb on - strand, within HER17_RS00345 at 79.151 kb on - strand, within HER17_RS00345 at 79.151 kb on - strand, within HER17_RS00345 at 79.155 kb on - strand, within HER17_RS00345 at 79.155 kb on - strand, within HER17_RS00345 at 79.170 kb on - strand, within HER17_RS00345 at 79.198 kb on - strand, within HER17_RS00345 at 79.203 kb on + strand, within HER17_RS00345 at 79.210 kb on - strand, within HER17_RS00345 at 79.309 kb on + strand, within HER17_RS00345 at 79.310 kb on - strand, within HER17_RS00345 at 79.310 kb on - strand, within HER17_RS00345 at 79.369 kb on + strand, within HER17_RS00345 at 79.370 kb on - strand, within HER17_RS00345 at 79.392 kb on + strand, within HER17_RS00345 at 79.424 kb on - strand, within HER17_RS00345 at 79.435 kb on + strand, within HER17_RS00345 at 79.435 kb on + strand, within HER17_RS00345 at 79.436 kb on - strand, within HER17_RS00345 at 79.486 kb on + strand, within HER17_RS00345 at 79.555 kb on + strand, within HER17_RS00345 at 79.556 kb on - strand, within HER17_RS00345 at 79.573 kb on - strand, within HER17_RS00345 at 79.590 kb on + strand at 79.599 kb on + strand at 79.671 kb on - strand at 79.690 kb on + strand at 79.691 kb on - strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.701 kb on - strand at 79.743 kb on + strand at 79.743 kb on + strand at 79.743 kb on + strand at 79.747 kb on + strand at 79.747 kb on + strand at 79.748 kb on - strand at 79.815 kb on + strand at 79.824 kb on + strand at 79.825 kb on - strand at 79.825 kb on - strand at 79.848 kb on + strand at 79.848 kb on + strand at 79.849 kb on - strand at 79.849 kb on - strand at 80.100 kb on + strand, within HER17_RS00350 at 80.101 kb on - strand, within HER17_RS00350 at 80.101 kb on - strand, within HER17_RS00350 at 80.127 kb on + strand, within HER17_RS00350 at 80.127 kb on + strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.142 kb on + strand, within HER17_RS00350 at 80.142 kb on + strand, within HER17_RS00350 at 80.143 kb on - strand, within HER17_RS00350 at 80.143 kb on - strand, within HER17_RS00350 at 80.240 kb on - strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.253 kb on + strand, within HER17_RS00350 at 80.253 kb on + strand, within HER17_RS00350 at 80.253 kb on + strand, within HER17_RS00350 at 80.254 kb on - strand, within HER17_RS00350 at 80.254 kb on - strand, within HER17_RS00350 at 80.254 kb on - strand, within HER17_RS00350 at 80.256 kb on + strand, within HER17_RS00350 at 80.257 kb on - strand, within HER17_RS00350 at 80.257 kb on - strand, within HER17_RS00350 at 80.300 kb on - strand, within HER17_RS00350 at 80.358 kb on + strand, within HER17_RS00350 at 80.404 kb on + strand, within HER17_RS00350 at 80.511 kb on + strand, within HER17_RS00350 at 80.512 kb on - strand, within HER17_RS00350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 77,732 - -0.5 77,758 + +0.4 77,758 + +0.4 77,764 + +0.3 77,852 + HER17_RS00340 0.18 -0.0 77,879 - HER17_RS00340 0.21 -0.1 77,879 - HER17_RS00340 0.21 -1.4 77,937 - HER17_RS00340 0.27 +0.8 77,941 + HER17_RS00340 0.27 +0.6 77,941 + HER17_RS00340 0.27 +0.2 77,941 + HER17_RS00340 0.27 -0.1 78,075 + HER17_RS00340 0.41 -0.0 78,075 + HER17_RS00340 0.41 +0.2 78,075 + HER17_RS00340 0.41 +0.1 78,076 - HER17_RS00340 0.41 -0.7 78,102 + HER17_RS00340 0.44 +0.5 78,223 - HER17_RS00340 0.56 +0.3 78,224 + HER17_RS00340 0.56 +0.4 78,262 - HER17_RS00340 0.60 +0.2 78,296 - HER17_RS00340 0.63 -0.2 78,299 + HER17_RS00340 0.64 +0.4 78,323 + HER17_RS00340 0.66 -1.1 78,341 - HER17_RS00340 0.68 +0.0 78,341 - HER17_RS00340 0.68 +0.5 78,341 - HER17_RS00340 0.68 -0.6 78,386 + HER17_RS00340 0.73 -0.6 78,390 + HER17_RS00340 0.73 -0.2 78,390 + HER17_RS00340 0.73 -0.5 78,474 + HER17_RS00340 0.82 +0.2 78,475 - HER17_RS00340 0.82 +0.5 78,652 - -0.1 78,654 + -0.1 78,726 + +0.2 78,727 - +0.1 78,738 + -0.3 78,738 + +0.5 78,804 + HER17_RS00345 0.11 -0.7 78,805 - HER17_RS00345 0.11 -0.7 78,807 + HER17_RS00345 0.11 -0.8 78,905 - HER17_RS00345 0.21 -0.8 79,029 - HER17_RS00345 0.34 +1.2 79,034 - HER17_RS00345 0.35 +0.1 79,060 + HER17_RS00345 0.37 +0.9 79,060 + HER17_RS00345 0.37 +0.7 79,078 - HER17_RS00345 0.39 -0.4 79,137 - HER17_RS00345 0.45 +0.8 79,137 - HER17_RS00345 0.45 -0.3 79,150 + HER17_RS00345 0.46 +1.1 79,150 + HER17_RS00345 0.46 -0.4 79,151 - HER17_RS00345 0.46 -0.0 79,151 - HER17_RS00345 0.46 -0.3 79,151 - HER17_RS00345 0.46 -0.7 79,155 - HER17_RS00345 0.47 -2.4 79,155 - HER17_RS00345 0.47 +0.6 79,170 - HER17_RS00345 0.48 -0.2 79,198 - HER17_RS00345 0.51 -0.6 79,203 + HER17_RS00345 0.52 +0.5 79,210 - HER17_RS00345 0.52 -0.3 79,309 + HER17_RS00345 0.63 +0.1 79,310 - HER17_RS00345 0.63 -0.3 79,310 - HER17_RS00345 0.63 +0.5 79,369 + HER17_RS00345 0.69 +0.7 79,370 - HER17_RS00345 0.69 -0.5 79,392 + HER17_RS00345 0.71 +0.1 79,424 - HER17_RS00345 0.74 -0.3 79,435 + HER17_RS00345 0.75 -0.0 79,435 + HER17_RS00345 0.75 +1.5 79,436 - HER17_RS00345 0.76 +0.0 79,486 + HER17_RS00345 0.81 +0.4 79,555 + HER17_RS00345 0.88 +0.0 79,556 - HER17_RS00345 0.88 +1.3 79,573 - HER17_RS00345 0.90 -0.6 79,590 + +0.6 79,599 + +0.0 79,671 - +0.4 79,690 + +0.7 79,691 - -0.8 79,700 + +0.3 79,700 + -0.1 79,700 + -0.3 79,700 + -0.6 79,701 - -0.1 79,743 + -0.5 79,743 + +0.4 79,743 + +0.1 79,747 + +0.6 79,747 + +0.5 79,748 - -0.1 79,815 + +0.5 79,824 + -0.1 79,825 - -0.7 79,825 - -1.2 79,848 + -0.0 79,848 + -1.9 79,849 - +0.6 79,849 - -0.1 80,100 + HER17_RS00350 0.10 +0.8 80,101 - HER17_RS00350 0.10 -0.7 80,101 - HER17_RS00350 0.10 -0.4 80,127 + HER17_RS00350 0.11 +0.1 80,127 + HER17_RS00350 0.11 +0.0 80,128 - HER17_RS00350 0.11 -0.5 80,128 - HER17_RS00350 0.11 +0.5 80,128 - HER17_RS00350 0.11 -0.1 80,128 - HER17_RS00350 0.11 +0.1 80,142 + HER17_RS00350 0.11 -0.4 80,142 + HER17_RS00350 0.11 -0.4 80,143 - HER17_RS00350 0.11 -0.2 80,143 - HER17_RS00350 0.11 +0.9 80,240 - HER17_RS00350 0.14 +0.2 80,250 + HER17_RS00350 0.14 -0.2 80,250 + HER17_RS00350 0.14 -0.6 80,250 + HER17_RS00350 0.14 -0.9 80,250 + HER17_RS00350 0.14 -0.8 80,251 - HER17_RS00350 0.14 +0.7 80,251 - HER17_RS00350 0.14 -0.2 80,251 - HER17_RS00350 0.14 -1.1 80,251 - HER17_RS00350 0.14 -0.2 80,251 - HER17_RS00350 0.14 -2.4 80,253 + HER17_RS00350 0.14 +0.5 80,253 + HER17_RS00350 0.14 -0.1 80,253 + HER17_RS00350 0.14 -0.0 80,254 - HER17_RS00350 0.14 +0.3 80,254 - HER17_RS00350 0.14 +0.7 80,254 - HER17_RS00350 0.14 -0.0 80,256 + HER17_RS00350 0.14 +0.2 80,257 - HER17_RS00350 0.14 +0.5 80,257 - HER17_RS00350 0.14 -0.6 80,300 - HER17_RS00350 0.16 -0.6 80,358 + HER17_RS00350 0.17 -0.4 80,404 + HER17_RS00350 0.19 +1.1 80,511 + HER17_RS00350 0.22 -0.1 80,512 - HER17_RS00350 0.22 +0.3
Or see this region's nucleotide sequence