Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00100 and HER17_RS00105 are separated by 1 nucleotides HER17_RS00105 and HER17_RS00110 overlap by 1 nucleotides HER17_RS00110 and HER17_RS00115 overlap by 4 nucleotides HER17_RS00115 and HER17_RS00120 are separated by 39 nucleotides
HER17_RS00100: HER17_RS00100 - nucleoside hydrolase, at 21,351 to 22,304
_RS00100
HER17_RS00105: HER17_RS00105 - nucleoside hydrolase, at 22,306 to 23,295
_RS00105
HER17_RS00110: HER17_RS00110 - ABC transporter permease, at 23,295 to 24,272
_RS00110
HER17_RS00115: HER17_RS00115 - ABC transporter permease, at 24,269 to 25,177
_RS00115
HER17_RS00120: HER17_RS00120 - ABC transporter ATP-binding protein, at 25,217 to 27,022
_RS00120
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 22.323 kb on + strand at 22.323 kb on + strand at 22.323 kb on + strand at 22.324 kb on - strand at 22.324 kb on - strand at 22.324 kb on - strand at 22.333 kb on - strand at 22.359 kb on - strand at 22.427 kb on + strand, within HER17_RS00105 at 22.428 kb on - strand, within HER17_RS00105 at 22.542 kb on + strand, within HER17_RS00105 at 22.546 kb on + strand, within HER17_RS00105 at 22.546 kb on + strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.547 kb on - strand, within HER17_RS00105 at 22.555 kb on - strand, within HER17_RS00105 at 22.662 kb on + strand, within HER17_RS00105 at 22.743 kb on + strand, within HER17_RS00105 at 22.776 kb on + strand, within HER17_RS00105 at 22.812 kb on + strand, within HER17_RS00105 at 22.980 kb on + strand, within HER17_RS00105 at 23.103 kb on - strand, within HER17_RS00105 at 23.103 kb on - strand, within HER17_RS00105 at 23.146 kb on + strand, within HER17_RS00105 at 23.265 kb on + strand at 23.265 kb on + strand at 23.265 kb on + strand at 23.304 kb on + strand at 23.348 kb on + strand at 23.348 kb on + strand at 23.349 kb on - strand at 23.349 kb on - strand at 23.349 kb on - strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.369 kb on - strand at 23.369 kb on - strand at 23.377 kb on - strand at 23.388 kb on - strand at 23.399 kb on + strand, within HER17_RS00110 at 23.534 kb on + strand, within HER17_RS00110 at 23.541 kb on - strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.647 kb on - strand, within HER17_RS00110 at 23.712 kb on - strand, within HER17_RS00110 at 23.873 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.097 kb on - strand, within HER17_RS00110 at 24.097 kb on - strand, within HER17_RS00110 at 24.168 kb on + strand, within HER17_RS00110 at 24.168 kb on + strand, within HER17_RS00110 at 24.203 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.226 kb on - strand at 24.226 kb on - strand at 24.226 kb on - strand at 24.280 kb on + strand at 24.281 kb on - strand at 24.281 kb on - strand at 24.285 kb on + strand at 24.286 kb on - strand at 24.513 kb on - strand, within HER17_RS00115 at 24.563 kb on + strand, within HER17_RS00115 at 24.644 kb on - strand, within HER17_RS00115 at 24.650 kb on + strand, within HER17_RS00115 at 24.651 kb on - strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.704 kb on - strand, within HER17_RS00115 at 24.800 kb on + strand, within HER17_RS00115 at 24.800 kb on + strand, within HER17_RS00115 at 24.801 kb on - strand, within HER17_RS00115 at 24.803 kb on + strand, within HER17_RS00115 at 24.803 kb on + strand, within HER17_RS00115 at 24.803 kb on + strand, within HER17_RS00115 at 24.851 kb on + strand, within HER17_RS00115 at 24.852 kb on - strand, within HER17_RS00115 at 24.907 kb on + strand, within HER17_RS00115 at 24.907 kb on + strand, within HER17_RS00115 at 24.913 kb on - strand, within HER17_RS00115 at 24.963 kb on - strand, within HER17_RS00115 at 25.059 kb on - strand, within HER17_RS00115 at 25.076 kb on + strand, within HER17_RS00115 at 25.175 kb on + strand at 25.200 kb on + strand at 25.201 kb on - strand at 25.231 kb on + strand at 25.231 kb on + strand at 25.232 kb on - strand at 25.232 kb on - strand at 25.232 kb on - strand at 25.232 kb on - strand at 25.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 22,323 + -1.3 22,323 + +0.5 22,323 + +0.8 22,324 - -1.4 22,324 - +0.6 22,324 - +0.5 22,333 - -0.4 22,359 - +1.7 22,427 + HER17_RS00105 0.12 -0.9 22,428 - HER17_RS00105 0.12 -0.4 22,542 + HER17_RS00105 0.24 +0.2 22,546 + HER17_RS00105 0.24 -0.4 22,546 + HER17_RS00105 0.24 +0.4 22,547 - HER17_RS00105 0.24 -0.1 22,547 - HER17_RS00105 0.24 +0.1 22,547 - HER17_RS00105 0.24 +0.9 22,547 - HER17_RS00105 0.24 -1.1 22,547 - HER17_RS00105 0.24 +2.8 22,547 - HER17_RS00105 0.24 -0.0 22,547 - HER17_RS00105 0.24 -0.3 22,547 - HER17_RS00105 0.24 +0.3 22,555 - HER17_RS00105 0.25 +0.3 22,662 + HER17_RS00105 0.36 +0.9 22,743 + HER17_RS00105 0.44 -1.2 22,776 + HER17_RS00105 0.47 -0.8 22,812 + HER17_RS00105 0.51 -1.1 22,980 + HER17_RS00105 0.68 -0.2 23,103 - HER17_RS00105 0.81 -0.0 23,103 - HER17_RS00105 0.81 -0.1 23,146 + HER17_RS00105 0.85 -0.3 23,265 + -0.2 23,265 + -0.6 23,265 + -1.2 23,304 + +0.5 23,348 + +0.0 23,348 + +0.3 23,349 - -0.6 23,349 - +0.8 23,349 - +0.3 23,368 + +0.4 23,368 + +0.3 23,368 + +0.3 23,368 + +0.5 23,368 + -1.7 23,369 - -0.1 23,369 - -0.9 23,377 - +0.5 23,388 - -0.4 23,399 + HER17_RS00110 0.11 -0.7 23,534 + HER17_RS00110 0.24 -0.0 23,541 - HER17_RS00110 0.25 -0.9 23,646 + HER17_RS00110 0.36 -0.5 23,646 + HER17_RS00110 0.36 -0.4 23,646 + HER17_RS00110 0.36 -0.1 23,647 - HER17_RS00110 0.36 +0.4 23,712 - HER17_RS00110 0.43 -0.5 23,873 + HER17_RS00110 0.59 +0.5 23,949 + HER17_RS00110 0.67 -0.0 23,949 + HER17_RS00110 0.67 -0.1 23,949 + HER17_RS00110 0.67 +0.0 23,949 + HER17_RS00110 0.67 +0.2 23,949 + HER17_RS00110 0.67 +0.0 23,949 + HER17_RS00110 0.67 +0.6 23,950 - HER17_RS00110 0.67 +0.6 23,950 - HER17_RS00110 0.67 +0.4 23,950 - HER17_RS00110 0.67 +0.6 23,950 - HER17_RS00110 0.67 +0.0 24,096 + HER17_RS00110 0.82 -0.9 24,096 + HER17_RS00110 0.82 -0.5 24,096 + HER17_RS00110 0.82 -0.7 24,096 + HER17_RS00110 0.82 -0.1 24,097 - HER17_RS00110 0.82 -0.4 24,097 - HER17_RS00110 0.82 -0.5 24,168 + HER17_RS00110 0.89 +0.2 24,168 + HER17_RS00110 0.89 +0.0 24,203 + -0.0 24,225 + +0.7 24,225 + +0.3 24,225 + +0.2 24,225 + +0.5 24,225 + -0.2 24,226 - -0.4 24,226 - -0.1 24,226 - -0.3 24,280 + -0.0 24,281 - +0.4 24,281 - -1.2 24,285 + +0.7 24,286 - +0.2 24,513 - HER17_RS00115 0.27 -0.0 24,563 + HER17_RS00115 0.32 -0.0 24,644 - HER17_RS00115 0.41 +0.2 24,650 + HER17_RS00115 0.42 +0.2 24,651 - HER17_RS00115 0.42 -0.1 24,703 + HER17_RS00115 0.48 +0.0 24,703 + HER17_RS00115 0.48 -0.1 24,703 + HER17_RS00115 0.48 +0.0 24,703 + HER17_RS00115 0.48 +0.0 24,703 + HER17_RS00115 0.48 +0.8 24,704 - HER17_RS00115 0.48 +0.3 24,800 + HER17_RS00115 0.58 -0.3 24,800 + HER17_RS00115 0.58 -0.1 24,801 - HER17_RS00115 0.59 -0.3 24,803 + HER17_RS00115 0.59 +0.1 24,803 + HER17_RS00115 0.59 +0.2 24,803 + HER17_RS00115 0.59 -0.2 24,851 + HER17_RS00115 0.64 +0.4 24,852 - HER17_RS00115 0.64 -0.1 24,907 + HER17_RS00115 0.70 +0.4 24,907 + HER17_RS00115 0.70 -0.9 24,913 - HER17_RS00115 0.71 +0.5 24,963 - HER17_RS00115 0.76 -0.3 25,059 - HER17_RS00115 0.87 +1.2 25,076 + HER17_RS00115 0.89 -0.0 25,175 + +0.1 25,200 + -0.5 25,201 - -0.2 25,231 + -0.3 25,231 + +0.3 25,232 - -2.7 25,232 - -0.2 25,232 - -1.2 25,232 - +0.1 25,232 - -1.1
Or see this region's nucleotide sequence