Strain Fitness in Escherichia coli BL21 around ECD_00270

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00268 and ECD_00269 are separated by 13 nucleotidesECD_00269 and ECD_00270 are separated by 128 nucleotidesECD_00270 and ECD_00271 are separated by 874 nucleotides ECD_00268: ECD_00268 - betaine aldehyde dehydrogenase, NAD-dependent, at 296,889 to 298,361 _00268 ECD_00269: ECD_00269 - choline-inducible betIBA-betT divergent operon transcriptional repressor, at 298,375 to 298,962 _00269 ECD_00270: ECD_00270 - choline transporter of high affinity, at 299,091 to 301,124 _00270 ECD_00271: ECD_00271 - c-di-GMP-specific phosphodiesterase, at 301,999 to 303,087 _00271 Position (kb) 299 300 301 302Strain fitness (log2 ratio) -1 0 1at 298.130 kb on + strand, within ECD_00268at 298.330 kb on - strandat 298.330 kb on - strandat 298.330 kb on - strandat 298.330 kb on - strandat 298.330 kb on - strandat 298.330 kb on - strandat 298.331 kb on + strandat 298.332 kb on - strandat 298.333 kb on + strandat 298.615 kb on - strand, within ECD_00269at 298.736 kb on - strand, within ECD_00269at 298.818 kb on - strand, within ECD_00269at 298.898 kb on - strand, within ECD_00269at 299.259 kb on + strandat 299.262 kb on + strandat 299.263 kb on - strandat 299.283 kb on + strandat 299.283 kb on + strandat 299.285 kb on + strandat 299.451 kb on + strand, within ECD_00270at 299.451 kb on + strand, within ECD_00270at 299.451 kb on + strand, within ECD_00270at 299.452 kb on - strand, within ECD_00270at 299.453 kb on + strand, within ECD_00270at 299.453 kb on + strand, within ECD_00270at 299.454 kb on - strand, within ECD_00270at 299.551 kb on - strand, within ECD_00270at 299.592 kb on + strand, within ECD_00270at 299.697 kb on - strand, within ECD_00270at 299.742 kb on - strand, within ECD_00270at 299.742 kb on - strand, within ECD_00270at 299.745 kb on + strand, within ECD_00270at 299.745 kb on + strand, within ECD_00270at 299.746 kb on - strand, within ECD_00270at 299.746 kb on - strand, within ECD_00270at 299.758 kb on + strand, within ECD_00270at 299.828 kb on + strand, within ECD_00270at 299.879 kb on + strand, within ECD_00270at 299.945 kb on + strand, within ECD_00270at 299.946 kb on - strand, within ECD_00270at 300.167 kb on + strand, within ECD_00270at 300.213 kb on + strand, within ECD_00270at 300.280 kb on - strand, within ECD_00270at 300.298 kb on - strand, within ECD_00270at 300.314 kb on + strand, within ECD_00270at 300.413 kb on + strand, within ECD_00270at 300.414 kb on - strand, within ECD_00270at 300.596 kb on - strand, within ECD_00270at 300.719 kb on + strand, within ECD_00270at 300.792 kb on + strand, within ECD_00270at 301.070 kb on + strandat 301.071 kb on - strandat 301.129 kb on + strandat 301.190 kb on - strandat 301.190 kb on - strandat 301.192 kb on - strandat 301.212 kb on - strandat 301.557 kb on + strandat 301.662 kb on + strandat 301.897 kb on + strandat 301.897 kb on + strandat 301.898 kb on - strandat 301.901 kb on + strandat 301.901 kb on + strandat 301.932 kb on + strandat 301.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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298,130 + ECD_00268 0.84 +0.9
298,330 - +1.1
298,330 - -0.4
298,330 - -0.1
298,330 - +0.4
298,330 - -0.1
298,330 - -0.5
298,331 + -0.1
298,332 - +0.3
298,333 + +0.5
298,615 - ECD_00269 0.41 +1.2
298,736 - ECD_00269 0.61 +0.1
298,818 - ECD_00269 0.75 -0.1
298,898 - ECD_00269 0.89 +0.2
299,259 + -0.0
299,262 + -0.6
299,263 - +0.2
299,283 + +1.0
299,283 + +0.2
299,285 + +1.0
299,451 + ECD_00270 0.18 +0.7
299,451 + ECD_00270 0.18 +0.2
299,451 + ECD_00270 0.18 +0.8
299,452 - ECD_00270 0.18 +0.7
299,453 + ECD_00270 0.18 +0.4
299,453 + ECD_00270 0.18 +0.8
299,454 - ECD_00270 0.18 +0.3
299,551 - ECD_00270 0.23 +0.3
299,592 + ECD_00270 0.25 +0.5
299,697 - ECD_00270 0.30 +0.1
299,742 - ECD_00270 0.32 +0.2
299,742 - ECD_00270 0.32 +0.9
299,745 + ECD_00270 0.32 +1.3
299,745 + ECD_00270 0.32 -1.3
299,746 - ECD_00270 0.32 -1.3
299,746 - ECD_00270 0.32 -0.2
299,758 + ECD_00270 0.33 +0.3
299,828 + ECD_00270 0.36 +0.7
299,879 + ECD_00270 0.39 +1.1
299,945 + ECD_00270 0.42 -0.1
299,946 - ECD_00270 0.42 -1.0
300,167 + ECD_00270 0.53 +0.1
300,213 + ECD_00270 0.55 -0.8
300,280 - ECD_00270 0.58 +0.2
300,298 - ECD_00270 0.59 +1.3
300,314 + ECD_00270 0.60 +0.0
300,413 + ECD_00270 0.65 +0.5
300,414 - ECD_00270 0.65 -0.9
300,596 - ECD_00270 0.74 -0.6
300,719 + ECD_00270 0.80 -0.0
300,792 + ECD_00270 0.84 +0.7
301,070 + -0.7
301,071 - -0.4
301,129 + +1.2
301,190 - +0.1
301,190 - -0.2
301,192 - +0.0
301,212 - -0.5
301,557 + +0.1
301,662 + +0.9
301,897 + -0.7
301,897 + -0.1
301,898 - -0.5
301,901 + -0.3
301,901 + +0.3
301,932 + -0.8
301,932 + -0.2

Or see this region's nucleotide sequence