Strain Fitness in Escherichia coli BL21 around ECD_03985

Experiment: Tailocin 264

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03983 and ECD_03984 are separated by 9 nucleotidesECD_03984 and ECD_03985 overlap by 4 nucleotidesECD_03985 and ECD_03986 are separated by 103 nucleotides ECD_03983: ECD_03983 - sensory histidine kinase in two-component regulatory system with BasR, at 4,239,260 to 4,240,351 _03983 ECD_03984: ECD_03984 - response regulator in two-component regulatory system with BasS, at 4,240,361 to 4,241,029 _03984 ECD_03985: ECD_03985 - lipid A phosphoethanolamine transferase, at 4,241,026 to 4,242,669 _03985 ECD_03986: ECD_03986 - arginine:agmatine antiporter, at 4,242,773 to 4,244,110 _03986 Position (kb) 4241 4242 4243Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 4240.109 kb on + strand, within ECD_03983at 4240.241 kb on - strand, within ECD_03983at 4240.387 kb on + strandat 4240.387 kb on + strandat 4240.387 kb on + strandat 4240.388 kb on - strandat 4240.388 kb on - strandat 4240.388 kb on - strandat 4240.388 kb on - strandat 4240.388 kb on - strandat 4240.388 kb on - strandat 4240.388 kb on - strandat 4240.388 kb on - strandat 4240.389 kb on + strandat 4240.390 kb on - strandat 4240.493 kb on - strand, within ECD_03984at 4240.494 kb on + strand, within ECD_03984at 4240.494 kb on + strand, within ECD_03984at 4240.494 kb on + strand, within ECD_03984at 4240.494 kb on + strand, within ECD_03984at 4240.494 kb on + strand, within ECD_03984at 4240.494 kb on + strand, within ECD_03984at 4240.494 kb on + strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.495 kb on - strand, within ECD_03984at 4240.567 kb on - strand, within ECD_03984at 4240.567 kb on - strand, within ECD_03984at 4240.607 kb on + strand, within ECD_03984at 4240.608 kb on - strand, within ECD_03984at 4240.624 kb on + strand, within ECD_03984at 4240.670 kb on - strand, within ECD_03984at 4240.738 kb on - strand, within ECD_03984at 4240.819 kb on - strand, within ECD_03984at 4241.058 kb on + strandat 4241.059 kb on - strandat 4241.079 kb on - strandat 4241.079 kb on - strandat 4241.099 kb on - strandat 4241.120 kb on - strandat 4241.120 kb on - strandat 4241.255 kb on + strand, within ECD_03985at 4241.255 kb on + strand, within ECD_03985at 4241.273 kb on + strand, within ECD_03985at 4241.273 kb on + strand, within ECD_03985at 4241.273 kb on + strand, within ECD_03985at 4241.274 kb on - strand, within ECD_03985at 4241.274 kb on - strand, within ECD_03985at 4241.290 kb on + strand, within ECD_03985at 4241.379 kb on + strand, within ECD_03985at 4241.380 kb on - strand, within ECD_03985at 4241.380 kb on - strand, within ECD_03985at 4241.382 kb on - strand, within ECD_03985at 4241.409 kb on - strand, within ECD_03985at 4241.501 kb on + strand, within ECD_03985at 4241.502 kb on - strand, within ECD_03985at 4241.533 kb on + strand, within ECD_03985at 4241.533 kb on + strand, within ECD_03985at 4241.534 kb on - strand, within ECD_03985at 4241.534 kb on - strand, within ECD_03985at 4241.534 kb on - strand, within ECD_03985at 4241.570 kb on + strand, within ECD_03985at 4241.571 kb on - strand, within ECD_03985at 4241.593 kb on + strand, within ECD_03985at 4241.594 kb on - strand, within ECD_03985at 4241.594 kb on - strand, within ECD_03985at 4241.594 kb on - strand, within ECD_03985at 4241.604 kb on - strand, within ECD_03985at 4241.683 kb on - strand, within ECD_03985at 4241.683 kb on - strand, within ECD_03985at 4241.778 kb on - strand, within ECD_03985at 4241.794 kb on - strand, within ECD_03985at 4241.794 kb on - strand, within ECD_03985at 4241.859 kb on - strand, within ECD_03985at 4241.889 kb on + strand, within ECD_03985at 4242.054 kb on - strand, within ECD_03985at 4242.092 kb on - strand, within ECD_03985at 4242.114 kb on + strand, within ECD_03985at 4242.134 kb on + strand, within ECD_03985at 4242.134 kb on + strand, within ECD_03985at 4242.135 kb on - strand, within ECD_03985at 4242.173 kb on - strand, within ECD_03985at 4242.176 kb on - strand, within ECD_03985at 4242.176 kb on - strand, within ECD_03985at 4242.340 kb on - strand, within ECD_03985at 4242.340 kb on - strand, within ECD_03985at 4242.345 kb on + strand, within ECD_03985at 4242.384 kb on - strand, within ECD_03985at 4242.392 kb on - strand, within ECD_03985at 4242.448 kb on - strand, within ECD_03985at 4242.448 kb on - strand, within ECD_03985at 4242.455 kb on - strand, within ECD_03985at 4242.467 kb on - strand, within ECD_03985at 4242.467 kb on - strand, within ECD_03985at 4242.480 kb on + strand, within ECD_03985at 4242.481 kb on - strand, within ECD_03985at 4242.483 kb on + strand, within ECD_03985at 4242.527 kb on - strandat 4242.595 kb on - strandat 4242.595 kb on - strandat 4242.595 kb on - strandat 4242.602 kb on + strandat 4242.603 kb on - strandat 4242.603 kb on - strandat 4242.632 kb on - strandat 4242.751 kb on - strandat 4242.814 kb on + strandat 4242.815 kb on - strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.841 kb on - strandat 4242.841 kb on - strandat 4242.841 kb on - strandat 4242.841 kb on - strandat 4242.880 kb on + strandat 4242.881 kb on - strandat 4242.881 kb on - strandat 4242.881 kb on - strandat 4242.881 kb on - strandat 4242.922 kb on - strand, within ECD_03986at 4242.937 kb on + strand, within ECD_03986at 4242.937 kb on + strand, within ECD_03986at 4242.941 kb on - strand, within ECD_03986at 4242.941 kb on - strand, within ECD_03986at 4242.951 kb on + strand, within ECD_03986at 4242.968 kb on - strand, within ECD_03986at 4242.995 kb on + strand, within ECD_03986at 4243.012 kb on - strand, within ECD_03986at 4243.012 kb on - strand, within ECD_03986at 4243.017 kb on + strand, within ECD_03986at 4243.018 kb on - strand, within ECD_03986at 4243.031 kb on - strand, within ECD_03986at 4243.250 kb on + strand, within ECD_03986at 4243.251 kb on - strand, within ECD_03986at 4243.384 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.392 kb on - strand, within ECD_03986at 4243.395 kb on + strand, within ECD_03986at 4243.395 kb on + strand, within ECD_03986at 4243.396 kb on - strand, within ECD_03986at 4243.396 kb on - strand, within ECD_03986at 4243.396 kb on - strand, within ECD_03986at 4243.416 kb on - strand, within ECD_03986at 4243.416 kb on - strand, within ECD_03986at 4243.525 kb on + strand, within ECD_03986at 4243.525 kb on + strand, within ECD_03986at 4243.576 kb on + strand, within ECD_03986at 4243.578 kb on + strand, within ECD_03986at 4243.578 kb on + strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.610 kb on + strand, within ECD_03986

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 264
remove
4,240,109 + ECD_03983 0.78 -5.1
4,240,241 - ECD_03983 0.90 -3.9
4,240,387 + -4.9
4,240,387 + -4.0
4,240,387 + -4.0
4,240,388 - -5.6
4,240,388 - -5.4
4,240,388 - -4.4
4,240,388 - -7.6
4,240,388 - -6.1
4,240,388 - -6.9
4,240,388 - -6.1
4,240,388 - -6.8
4,240,389 + -4.6
4,240,390 - -6.0
4,240,493 - ECD_03984 0.20 -3.4
4,240,494 + ECD_03984 0.20 -5.4
4,240,494 + ECD_03984 0.20 -4.1
4,240,494 + ECD_03984 0.20 -6.6
4,240,494 + ECD_03984 0.20 -5.0
4,240,494 + ECD_03984 0.20 -5.2
4,240,494 + ECD_03984 0.20 -4.7
4,240,494 + ECD_03984 0.20 -5.0
4,240,495 - ECD_03984 0.20 -5.1
4,240,495 - ECD_03984 0.20 -4.2
4,240,495 - ECD_03984 0.20 -6.0
4,240,495 - ECD_03984 0.20 -2.0
4,240,495 - ECD_03984 0.20 -4.3
4,240,495 - ECD_03984 0.20 -5.3
4,240,495 - ECD_03984 0.20 -4.9
4,240,495 - ECD_03984 0.20 -4.9
4,240,495 - ECD_03984 0.20 -3.2
4,240,567 - ECD_03984 0.31 -7.2
4,240,567 - ECD_03984 0.31 -2.3
4,240,607 + ECD_03984 0.37 -2.4
4,240,608 - ECD_03984 0.37 -4.5
4,240,624 + ECD_03984 0.39 -5.9
4,240,670 - ECD_03984 0.46 -5.7
4,240,738 - ECD_03984 0.56 -3.9
4,240,819 - ECD_03984 0.68 -2.5
4,241,058 + -4.4
4,241,059 - -0.4
4,241,079 - +0.3
4,241,079 - +0.4
4,241,099 - -0.2
4,241,120 - +0.3
4,241,120 - -0.4
4,241,255 + ECD_03985 0.14 -0.7
4,241,255 + ECD_03985 0.14 -3.6
4,241,273 + ECD_03985 0.15 -3.0
4,241,273 + ECD_03985 0.15 -3.6
4,241,273 + ECD_03985 0.15 -3.6
4,241,274 - ECD_03985 0.15 +0.3
4,241,274 - ECD_03985 0.15 -0.4
4,241,290 + ECD_03985 0.16 -2.5
4,241,379 + ECD_03985 0.21 -2.4
4,241,380 - ECD_03985 0.22 -0.1
4,241,380 - ECD_03985 0.22 -0.1
4,241,382 - ECD_03985 0.22 -0.2
4,241,409 - ECD_03985 0.23 -0.2
4,241,501 + ECD_03985 0.29 -3.1
4,241,502 - ECD_03985 0.29 -1.0
4,241,533 + ECD_03985 0.31 -2.0
4,241,533 + ECD_03985 0.31 -4.3
4,241,534 - ECD_03985 0.31 +0.0
4,241,534 - ECD_03985 0.31 -0.2
4,241,534 - ECD_03985 0.31 -0.2
4,241,570 + ECD_03985 0.33 -2.2
4,241,571 - ECD_03985 0.33 -0.4
4,241,593 + ECD_03985 0.34 -3.4
4,241,594 - ECD_03985 0.35 -1.0
4,241,594 - ECD_03985 0.35 +0.1
4,241,594 - ECD_03985 0.35 -2.0
4,241,604 - ECD_03985 0.35 +0.0
4,241,683 - ECD_03985 0.40 -0.1
4,241,683 - ECD_03985 0.40 +0.2
4,241,778 - ECD_03985 0.46 -0.2
4,241,794 - ECD_03985 0.47 +1.7
4,241,794 - ECD_03985 0.47 +0.2
4,241,859 - ECD_03985 0.51 -0.6
4,241,889 + ECD_03985 0.52 -4.9
4,242,054 - ECD_03985 0.63 -0.4
4,242,092 - ECD_03985 0.65 +0.1
4,242,114 + ECD_03985 0.66 -3.0
4,242,134 + ECD_03985 0.67 -3.8
4,242,134 + ECD_03985 0.67 -3.8
4,242,135 - ECD_03985 0.67 -0.5
4,242,173 - ECD_03985 0.70 -0.6
4,242,176 - ECD_03985 0.70 +0.9
4,242,176 - ECD_03985 0.70 -0.5
4,242,340 - ECD_03985 0.80 -0.7
4,242,340 - ECD_03985 0.80 +1.0
4,242,345 + ECD_03985 0.80 -2.8
4,242,384 - ECD_03985 0.83 -0.4
4,242,392 - ECD_03985 0.83 -0.7
4,242,448 - ECD_03985 0.86 -0.6
4,242,448 - ECD_03985 0.86 -0.4
4,242,455 - ECD_03985 0.87 -0.6
4,242,467 - ECD_03985 0.88 -0.8
4,242,467 - ECD_03985 0.88 -0.4
4,242,480 + ECD_03985 0.88 -2.8
4,242,481 - ECD_03985 0.89 -0.5
4,242,483 + ECD_03985 0.89 -0.9
4,242,527 - -0.2
4,242,595 - -0.6
4,242,595 - -0.8
4,242,595 - -2.1
4,242,602 + -1.2
4,242,603 - -0.7
4,242,603 - -0.7
4,242,632 - -1.0
4,242,751 - +0.0
4,242,814 + -0.3
4,242,815 - -0.4
4,242,840 + +0.2
4,242,840 + +0.2
4,242,840 + -0.6
4,242,840 + -0.2
4,242,840 + +0.2
4,242,841 - +0.9
4,242,841 - +0.1
4,242,841 - +0.2
4,242,841 - +0.2
4,242,880 + -0.2
4,242,881 - +0.5
4,242,881 - +0.6
4,242,881 - +0.2
4,242,881 - -0.5
4,242,922 - ECD_03986 0.11 +0.1
4,242,937 + ECD_03986 0.12 +0.0
4,242,937 + ECD_03986 0.12 -0.5
4,242,941 - ECD_03986 0.13 +0.2
4,242,941 - ECD_03986 0.13 +0.2
4,242,951 + ECD_03986 0.13 -0.4
4,242,968 - ECD_03986 0.15 +0.1
4,242,995 + ECD_03986 0.17 -0.8
4,243,012 - ECD_03986 0.18 +0.5
4,243,012 - ECD_03986 0.18 +0.2
4,243,017 + ECD_03986 0.18 -0.1
4,243,018 - ECD_03986 0.18 -0.2
4,243,031 - ECD_03986 0.19 +0.5
4,243,250 + ECD_03986 0.36 -0.0
4,243,251 - ECD_03986 0.36 +0.0
4,243,384 + ECD_03986 0.46 +0.1
4,243,391 + ECD_03986 0.46 -0.7
4,243,391 + ECD_03986 0.46 +0.0
4,243,391 + ECD_03986 0.46 -0.3
4,243,391 + ECD_03986 0.46 -0.2
4,243,391 + ECD_03986 0.46 -0.3
4,243,391 + ECD_03986 0.46 +0.0
4,243,392 - ECD_03986 0.46 +0.6
4,243,395 + ECD_03986 0.46 -0.3
4,243,395 + ECD_03986 0.46 -0.2
4,243,396 - ECD_03986 0.47 -0.3
4,243,396 - ECD_03986 0.47 +0.8
4,243,396 - ECD_03986 0.47 +0.4
4,243,416 - ECD_03986 0.48 -0.1
4,243,416 - ECD_03986 0.48 -0.2
4,243,525 + ECD_03986 0.56 -0.2
4,243,525 + ECD_03986 0.56 +0.9
4,243,576 + ECD_03986 0.60 -0.2
4,243,578 + ECD_03986 0.60 +0.7
4,243,578 + ECD_03986 0.60 -0.2
4,243,579 - ECD_03986 0.60 +0.6
4,243,579 - ECD_03986 0.60 -0.4
4,243,579 - ECD_03986 0.60 -0.2
4,243,579 - ECD_03986 0.60 +0.6
4,243,579 - ECD_03986 0.60 -0.4
4,243,579 - ECD_03986 0.60 -0.4
4,243,610 + ECD_03986 0.63 -0.1

Or see this region's nucleotide sequence