Strain Fitness in Escherichia coli BL21 around ECD_02114

Experiment: Tailocin 264

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02112 and ECD_02113 are separated by 27 nucleotidesECD_02113 and ECD_02114 are separated by 148 nucleotidesECD_02114 and ECD_02115 are separated by 124 nucleotidesECD_02115 and ECD_02116 are separated by 138 nucleotides ECD_02112: ECD_02112 - bicyclomycin/cysteine/sulfonamide efflux transporter, at 2,173,419 to 2,174,609 _02112 ECD_02113: ECD_02113 - 16S rRNA pseudouridine(516) synthase, at 2,174,637 to 2,175,332 _02113 ECD_02114: ECD_02114 - putative ATP-dependent DNA or RNA helicase, at 2,175,481 to 2,177,241 _02114 ECD_02115: ECD_02115 - 50S ribosomal subunit protein L25, at 2,177,366 to 2,177,650 _02115 ECD_02116: ECD_02116 - spermidine nucleoid-associated protein, at 2,177,789 to 2,178,796 _02116 Position (kb) 2175 2176 2177 2178Strain fitness (log2 ratio) -1 0 1at 2174.524 kb on + strandat 2174.524 kb on + strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.529 kb on - strandat 2174.709 kb on - strand, within ECD_02113at 2174.721 kb on - strand, within ECD_02113at 2174.914 kb on - strand, within ECD_02113at 2174.939 kb on - strand, within ECD_02113at 2174.970 kb on - strand, within ECD_02113at 2175.122 kb on - strand, within ECD_02113at 2175.148 kb on + strand, within ECD_02113at 2175.227 kb on + strand, within ECD_02113at 2175.403 kb on - strandat 2175.415 kb on + strandat 2175.450 kb on + strandat 2175.450 kb on + strandat 2175.470 kb on + strandat 2175.588 kb on + strandat 2175.911 kb on + strand, within ECD_02114at 2175.964 kb on + strand, within ECD_02114at 2176.046 kb on - strand, within ECD_02114at 2176.046 kb on - strand, within ECD_02114at 2176.048 kb on - strand, within ECD_02114at 2176.048 kb on - strand, within ECD_02114at 2176.860 kb on + strand, within ECD_02114at 2176.860 kb on + strand, within ECD_02114at 2176.969 kb on + strand, within ECD_02114at 2177.246 kb on - strandat 2177.895 kb on - strand, within ECD_02116at 2177.915 kb on - strand, within ECD_02116at 2178.111 kb on + strand, within ECD_02116at 2178.112 kb on - strand, within ECD_02116at 2178.115 kb on + strand, within ECD_02116at 2178.116 kb on - strand, within ECD_02116at 2178.116 kb on - strand, within ECD_02116at 2178.116 kb on - strand, within ECD_02116at 2178.116 kb on - strand, within ECD_02116at 2178.118 kb on - strand, within ECD_02116at 2178.118 kb on - strand, within ECD_02116

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 264
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2,174,524 + +0.4
2,174,524 + -0.3
2,174,525 - +0.7
2,174,525 - +0.2
2,174,525 - -0.1
2,174,525 - +0.5
2,174,525 - +0.2
2,174,525 - -0.1
2,174,529 - +0.7
2,174,709 - ECD_02113 0.10 +0.1
2,174,721 - ECD_02113 0.12 +0.4
2,174,914 - ECD_02113 0.40 +0.2
2,174,939 - ECD_02113 0.43 -0.2
2,174,970 - ECD_02113 0.48 -0.0
2,175,122 - ECD_02113 0.70 -0.1
2,175,148 + ECD_02113 0.73 -0.3
2,175,227 + ECD_02113 0.85 -0.4
2,175,403 - -0.5
2,175,415 + +0.7
2,175,450 + +0.1
2,175,450 + -0.1
2,175,470 + +0.4
2,175,588 + -0.1
2,175,911 + ECD_02114 0.24 -0.9
2,175,964 + ECD_02114 0.27 -1.5
2,176,046 - ECD_02114 0.32 -0.7
2,176,046 - ECD_02114 0.32 -0.9
2,176,048 - ECD_02114 0.32 -0.1
2,176,048 - ECD_02114 0.32 -0.6
2,176,860 + ECD_02114 0.78 -1.2
2,176,860 + ECD_02114 0.78 -1.1
2,176,969 + ECD_02114 0.84 -1.3
2,177,246 - -1.1
2,177,895 - ECD_02116 0.11 -0.3
2,177,915 - ECD_02116 0.12 -0.1
2,178,111 + ECD_02116 0.32 -0.0
2,178,112 - ECD_02116 0.32 -1.4
2,178,115 + ECD_02116 0.32 -1.7
2,178,116 - ECD_02116 0.32 -0.5
2,178,116 - ECD_02116 0.32 +0.5
2,178,116 - ECD_02116 0.32 -0.0
2,178,116 - ECD_02116 0.32 +0.9
2,178,118 - ECD_02116 0.33 -0.1
2,178,118 - ECD_02116 0.33 +0.3

Or see this region's nucleotide sequence