Strain Fitness in Escherichia coli BL21 around ECD_01307

Experiment: Tailocin 264

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01306 and ECD_01307 are separated by 336 nucleotidesECD_01307 and ECD_01308 are separated by 50 nucleotides ECD_01306: ECD_01306 - murein peptide degradation regulator, at 1,378,358 to 1,379,257 _01306 ECD_01307: ECD_01307 - murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit, at 1,379,594 to 1,381,207 _01307 ECD_01308: ECD_01308 - mechanosensitive channel protein, very small conductance, at 1,381,258 to 1,382,289 _01308 Position (kb) 1379 1380 1381 1382Strain fitness (log2 ratio) -1 0 1at 1378.749 kb on - strand, within ECD_01306at 1380.473 kb on + strand, within ECD_01307at 1380.536 kb on - strand, within ECD_01307at 1381.190 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 264
remove
1,378,749 - ECD_01306 0.43 +0.5
1,380,473 + ECD_01307 0.54 -0.5
1,380,536 - ECD_01307 0.58 -0.4
1,381,190 + +0.6

Or see this region's nucleotide sequence