Strain Fitness in Escherichia coli BL21 around ECD_00389

Experiment: Tailocin 264

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00387 and ECD_00388 are separated by 245 nucleotidesECD_00388 and ECD_00389 are separated by 125 nucleotidesECD_00389 and ECD_00390 are separated by 269 nucleotides ECD_00387: ECD_00387 - peptidyl-prolyl cis/trans isomerase (trigger factor), at 422,817 to 424,115 _00387 ECD_00388: ECD_00388 - proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases, at 424,361 to 424,984 _00388 ECD_00389: ECD_00389 - ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease, at 425,110 to 426,384 _00389 ECD_00390: ECD_00390 - putative transposase insL for insertion sequence IS186, at 426,654 to 427,766 _00390 Position (kb) 425 426 427Strain fitness (log2 ratio) -2 -1 0 1at 424.127 kb on + strandat 424.250 kb on - strandat 424.279 kb on + strandat 424.291 kb on + strandat 424.315 kb on + strandat 424.367 kb on + strandat 424.460 kb on + strand, within ECD_00388at 424.460 kb on + strand, within ECD_00388at 424.470 kb on + strand, within ECD_00388at 424.576 kb on + strand, within ECD_00388at 424.576 kb on + strand, within ECD_00388at 424.580 kb on + strand, within ECD_00388at 424.581 kb on - strand, within ECD_00388at 424.591 kb on + strand, within ECD_00388at 424.591 kb on + strand, within ECD_00388at 424.627 kb on + strand, within ECD_00388at 424.627 kb on + strand, within ECD_00388at 424.628 kb on - strand, within ECD_00388at 424.631 kb on + strand, within ECD_00388at 424.631 kb on + strand, within ECD_00388at 424.631 kb on + strand, within ECD_00388at 424.884 kb on + strand, within ECD_00388at 424.884 kb on + strand, within ECD_00388at 425.010 kb on + strandat 425.010 kb on + strandat 425.010 kb on + strandat 425.014 kb on + strandat 425.036 kb on + strandat 425.149 kb on + strandat 425.212 kb on + strandat 425.212 kb on + strandat 425.237 kb on + strandat 425.237 kb on + strandat 425.338 kb on + strand, within ECD_00389at 425.338 kb on + strand, within ECD_00389at 425.386 kb on + strand, within ECD_00389at 425.386 kb on + strand, within ECD_00389at 425.386 kb on + strand, within ECD_00389at 425.395 kb on + strand, within ECD_00389at 425.395 kb on + strand, within ECD_00389at 425.567 kb on - strand, within ECD_00389at 425.646 kb on + strand, within ECD_00389at 425.760 kb on + strand, within ECD_00389at 426.021 kb on + strand, within ECD_00389at 426.236 kb on + strand, within ECD_00389at 426.262 kb on + strandat 426.314 kb on + strandat 426.404 kb on + strandat 426.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 264
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424,127 + -0.3
424,250 - +0.3
424,279 + -1.1
424,291 + +0.3
424,315 + +0.5
424,367 + -0.1
424,460 + ECD_00388 0.16 -2.3
424,460 + ECD_00388 0.16 -0.9
424,470 + ECD_00388 0.17 +0.6
424,576 + ECD_00388 0.34 -0.5
424,576 + ECD_00388 0.34 -1.3
424,580 + ECD_00388 0.35 -0.6
424,581 - ECD_00388 0.35 +0.2
424,591 + ECD_00388 0.37 +0.9
424,591 + ECD_00388 0.37 -0.5
424,627 + ECD_00388 0.43 +0.5
424,627 + ECD_00388 0.43 -0.6
424,628 - ECD_00388 0.43 +0.2
424,631 + ECD_00388 0.43 -1.0
424,631 + ECD_00388 0.43 +0.1
424,631 + ECD_00388 0.43 +0.8
424,884 + ECD_00388 0.84 -2.0
424,884 + ECD_00388 0.84 -1.4
425,010 + -0.4
425,010 + -0.1
425,010 + +0.6
425,014 + +0.0
425,036 + +0.3
425,149 + +0.4
425,212 + +0.5
425,212 + -0.5
425,237 + -0.1
425,237 + -0.3
425,338 + ECD_00389 0.18 -0.5
425,338 + ECD_00389 0.18 +0.3
425,386 + ECD_00389 0.22 -1.3
425,386 + ECD_00389 0.22 -1.1
425,386 + ECD_00389 0.22 -0.1
425,395 + ECD_00389 0.22 +0.1
425,395 + ECD_00389 0.22 +0.5
425,567 - ECD_00389 0.36 -0.6
425,646 + ECD_00389 0.42 -1.0
425,760 + ECD_00389 0.51 +0.1
426,021 + ECD_00389 0.71 -1.4
426,236 + ECD_00389 0.88 -1.6
426,262 + -0.4
426,314 + +0.7
426,404 + +0.1
426,486 - +0.0

Or see this region's nucleotide sequence