Experiment: Tailocin 264
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03945 and ECD_03946 are separated by 79 nucleotides ECD_03946 and ECD_03947 overlap by 8 nucleotides ECD_03947 and ECD_03948 overlap by 4 nucleotides
ECD_03945: ECD_03945 - formate-dependent nitrite reductase, membrane subunit, at 4,197,888 to 4,198,844
_03945
ECD_03946: ECD_03946 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE, at 4,198,924 to 4,200,582
_03946
ECD_03947: ECD_03947 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF, at 4,200,575 to 4,200,958
_03947
ECD_03948: ECD_03948 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG, at 4,200,955 to 4,201,551
_03948
Position (kb)
4198
4199
4200
4201 Strain fitness (log2 ratio)
-1
0
1 at 4198.001 kb on - strand, within ECD_03945 at 4198.037 kb on + strand, within ECD_03945 at 4198.037 kb on + strand, within ECD_03945 at 4198.038 kb on - strand, within ECD_03945 at 4198.149 kb on + strand, within ECD_03945 at 4198.197 kb on + strand, within ECD_03945 at 4198.197 kb on + strand, within ECD_03945 at 4198.198 kb on - strand, within ECD_03945 at 4198.371 kb on + strand, within ECD_03945 at 4198.372 kb on - strand, within ECD_03945 at 4198.372 kb on - strand, within ECD_03945 at 4198.372 kb on - strand, within ECD_03945 at 4198.538 kb on - strand, within ECD_03945 at 4198.561 kb on + strand, within ECD_03945 at 4198.562 kb on - strand, within ECD_03945 at 4198.648 kb on + strand, within ECD_03945 at 4198.648 kb on + strand, within ECD_03945 at 4198.649 kb on - strand, within ECD_03945 at 4198.649 kb on - strand, within ECD_03945 at 4198.649 kb on - strand, within ECD_03945 at 4198.871 kb on + strand at 4198.872 kb on - strand at 4198.872 kb on - strand at 4198.907 kb on + strand at 4198.907 kb on + strand at 4198.908 kb on - strand at 4199.047 kb on + strand at 4199.047 kb on + strand at 4199.080 kb on + strand at 4199.094 kb on + strand, within ECD_03946 at 4199.094 kb on + strand, within ECD_03946 at 4199.094 kb on + strand, within ECD_03946 at 4199.095 kb on - strand, within ECD_03946 at 4199.098 kb on + strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.258 kb on + strand, within ECD_03946 at 4199.258 kb on + strand, within ECD_03946 at 4199.259 kb on - strand, within ECD_03946 at 4199.283 kb on - strand, within ECD_03946 at 4199.283 kb on - strand, within ECD_03946 at 4199.283 kb on - strand, within ECD_03946 at 4199.379 kb on + strand, within ECD_03946 at 4199.380 kb on - strand, within ECD_03946 at 4199.401 kb on + strand, within ECD_03946 at 4199.402 kb on - strand, within ECD_03946 at 4199.402 kb on - strand, within ECD_03946 at 4199.453 kb on + strand, within ECD_03946 at 4199.561 kb on - strand, within ECD_03946 at 4199.712 kb on - strand, within ECD_03946 at 4199.712 kb on - strand, within ECD_03946 at 4199.715 kb on + strand, within ECD_03946 at 4199.716 kb on - strand, within ECD_03946 at 4199.716 kb on - strand, within ECD_03946 at 4199.744 kb on + strand, within ECD_03946 at 4199.744 kb on + strand, within ECD_03946 at 4199.744 kb on + strand, within ECD_03946 at 4199.745 kb on - strand, within ECD_03946 at 4199.835 kb on + strand, within ECD_03946 at 4199.857 kb on + strand, within ECD_03946 at 4199.921 kb on + strand, within ECD_03946 at 4199.958 kb on - strand, within ECD_03946 at 4200.247 kb on + strand, within ECD_03946 at 4200.292 kb on + strand, within ECD_03946 at 4200.433 kb on + strand at 4200.484 kb on + strand at 4200.484 kb on + strand at 4200.484 kb on + strand at 4200.484 kb on + strand at 4200.485 kb on - strand at 4200.485 kb on - strand at 4200.485 kb on - strand at 4200.489 kb on - strand at 4200.489 kb on - strand at 4200.489 kb on - strand at 4200.546 kb on - strand at 4200.580 kb on + strand at 4200.606 kb on + strand at 4200.610 kb on + strand at 4200.611 kb on - strand at 4200.637 kb on - strand, within ECD_03947 at 4200.655 kb on + strand, within ECD_03947 at 4200.686 kb on - strand, within ECD_03947 at 4200.700 kb on - strand, within ECD_03947 at 4200.760 kb on + strand, within ECD_03947 at 4200.854 kb on + strand, within ECD_03947 at 4200.854 kb on + strand, within ECD_03947 at 4200.855 kb on - strand, within ECD_03947 at 4200.912 kb on + strand, within ECD_03947 at 4200.913 kb on - strand, within ECD_03947 at 4200.915 kb on + strand, within ECD_03947 at 4201.001 kb on + strand at 4201.058 kb on + strand, within ECD_03948 at 4201.139 kb on + strand, within ECD_03948 at 4201.198 kb on + strand, within ECD_03948 at 4201.201 kb on + strand, within ECD_03948 at 4201.202 kb on - strand, within ECD_03948 at 4201.219 kb on + strand, within ECD_03948 at 4201.259 kb on + strand, within ECD_03948 at 4201.259 kb on + strand, within ECD_03948 at 4201.259 kb on + strand, within ECD_03948 at 4201.259 kb on + strand, within ECD_03948 at 4201.259 kb on + strand, within ECD_03948 at 4201.259 kb on + strand, within ECD_03948 at 4201.259 kb on + strand, within ECD_03948 at 4201.260 kb on - strand, within ECD_03948 at 4201.260 kb on - strand, within ECD_03948 at 4201.260 kb on - strand, within ECD_03948 at 4201.309 kb on + strand, within ECD_03948 at 4201.310 kb on - strand, within ECD_03948 at 4201.326 kb on + strand, within ECD_03948 at 4201.327 kb on - strand, within ECD_03948 at 4201.451 kb on + strand, within ECD_03948 at 4201.452 kb on - strand, within ECD_03948 at 4201.452 kb on - strand, within ECD_03948 at 4201.550 kb on - strand at 4201.571 kb on - strand at 4201.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tailocin 264 remove 4,198,001 - ECD_03945 0.12 -0.2 4,198,037 + ECD_03945 0.16 -0.7 4,198,037 + ECD_03945 0.16 -1.1 4,198,038 - ECD_03945 0.16 +0.2 4,198,149 + ECD_03945 0.27 +0.0 4,198,197 + ECD_03945 0.32 -0.2 4,198,197 + ECD_03945 0.32 +0.2 4,198,198 - ECD_03945 0.32 -0.8 4,198,371 + ECD_03945 0.50 -0.5 4,198,372 - ECD_03945 0.51 +0.7 4,198,372 - ECD_03945 0.51 -1.2 4,198,372 - ECD_03945 0.51 +0.1 4,198,538 - ECD_03945 0.68 +0.6 4,198,561 + ECD_03945 0.70 -0.1 4,198,562 - ECD_03945 0.70 +1.7 4,198,648 + ECD_03945 0.79 +0.1 4,198,648 + ECD_03945 0.79 +0.1 4,198,649 - ECD_03945 0.80 +0.1 4,198,649 - ECD_03945 0.80 +0.6 4,198,649 - ECD_03945 0.80 -0.3 4,198,871 + -0.1 4,198,872 - -0.7 4,198,872 - +0.4 4,198,907 + -0.7 4,198,907 + +0.6 4,198,908 - +0.0 4,199,047 + +1.0 4,199,047 + -0.0 4,199,080 + +0.0 4,199,094 + ECD_03946 0.10 +0.7 4,199,094 + ECD_03946 0.10 +1.4 4,199,094 + ECD_03946 0.10 -0.1 4,199,095 - ECD_03946 0.10 +0.6 4,199,098 + ECD_03946 0.10 +0.1 4,199,099 - ECD_03946 0.11 +0.7 4,199,099 - ECD_03946 0.11 +0.3 4,199,099 - ECD_03946 0.11 +0.3 4,199,099 - ECD_03946 0.11 +0.6 4,199,258 + ECD_03946 0.20 +0.4 4,199,258 + ECD_03946 0.20 +0.0 4,199,259 - ECD_03946 0.20 -0.7 4,199,283 - ECD_03946 0.22 +0.1 4,199,283 - ECD_03946 0.22 +0.6 4,199,283 - ECD_03946 0.22 +0.4 4,199,379 + ECD_03946 0.27 +0.2 4,199,380 - ECD_03946 0.27 -0.3 4,199,401 + ECD_03946 0.29 +1.2 4,199,402 - ECD_03946 0.29 -0.3 4,199,402 - ECD_03946 0.29 +0.5 4,199,453 + ECD_03946 0.32 -0.2 4,199,561 - ECD_03946 0.38 -0.2 4,199,712 - ECD_03946 0.47 +0.6 4,199,712 - ECD_03946 0.47 -0.1 4,199,715 + ECD_03946 0.48 -0.1 4,199,716 - ECD_03946 0.48 +0.4 4,199,716 - ECD_03946 0.48 -1.1 4,199,744 + ECD_03946 0.49 -0.5 4,199,744 + ECD_03946 0.49 -0.1 4,199,744 + ECD_03946 0.49 +0.6 4,199,745 - ECD_03946 0.49 -0.2 4,199,835 + ECD_03946 0.55 +1.0 4,199,857 + ECD_03946 0.56 +0.9 4,199,921 + ECD_03946 0.60 -0.3 4,199,958 - ECD_03946 0.62 +0.5 4,200,247 + ECD_03946 0.80 +0.1 4,200,292 + ECD_03946 0.82 +0.5 4,200,433 + +0.3 4,200,484 + -0.7 4,200,484 + +0.4 4,200,484 + -1.2 4,200,484 + +0.3 4,200,485 - -0.0 4,200,485 - +0.2 4,200,485 - -1.3 4,200,489 - +1.2 4,200,489 - -0.3 4,200,489 - -0.1 4,200,546 - +0.2 4,200,580 + -0.2 4,200,606 + -0.7 4,200,610 + +0.3 4,200,611 - +0.4 4,200,637 - ECD_03947 0.16 +0.2 4,200,655 + ECD_03947 0.21 +0.2 4,200,686 - ECD_03947 0.29 -0.0 4,200,700 - ECD_03947 0.33 -1.6 4,200,760 + ECD_03947 0.48 +0.4 4,200,854 + ECD_03947 0.73 -1.0 4,200,854 + ECD_03947 0.73 -0.2 4,200,855 - ECD_03947 0.73 +0.9 4,200,912 + ECD_03947 0.88 +0.0 4,200,913 - ECD_03947 0.88 +0.5 4,200,915 + ECD_03947 0.89 -0.4 4,201,001 + +0.0 4,201,058 + ECD_03948 0.17 +0.0 4,201,139 + ECD_03948 0.31 +0.5 4,201,198 + ECD_03948 0.41 -0.2 4,201,201 + ECD_03948 0.41 -0.2 4,201,202 - ECD_03948 0.41 +0.6 4,201,219 + ECD_03948 0.44 -1.1 4,201,259 + ECD_03948 0.51 +0.4 4,201,259 + ECD_03948 0.51 -0.2 4,201,259 + ECD_03948 0.51 -0.3 4,201,259 + ECD_03948 0.51 -0.5 4,201,259 + ECD_03948 0.51 -0.4 4,201,259 + ECD_03948 0.51 +0.1 4,201,259 + ECD_03948 0.51 -0.2 4,201,260 - ECD_03948 0.51 -1.0 4,201,260 - ECD_03948 0.51 +0.6 4,201,260 - ECD_03948 0.51 +0.0 4,201,309 + ECD_03948 0.59 +0.1 4,201,310 - ECD_03948 0.59 +0.4 4,201,326 + ECD_03948 0.62 +0.2 4,201,327 - ECD_03948 0.62 -0.4 4,201,451 + ECD_03948 0.83 +0.2 4,201,452 - ECD_03948 0.83 +0.0 4,201,452 - ECD_03948 0.83 -0.9 4,201,550 - -1.1 4,201,571 - +0.2 4,201,571 - -0.5
Or see this region's nucleotide sequence