Strain Fitness in Escherichia coli BL21 around ECD_03946

Experiment: Tailocin 264

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03945 and ECD_03946 are separated by 79 nucleotidesECD_03946 and ECD_03947 overlap by 8 nucleotidesECD_03947 and ECD_03948 overlap by 4 nucleotides ECD_03945: ECD_03945 - formate-dependent nitrite reductase, membrane subunit, at 4,197,888 to 4,198,844 _03945 ECD_03946: ECD_03946 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE, at 4,198,924 to 4,200,582 _03946 ECD_03947: ECD_03947 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF, at 4,200,575 to 4,200,958 _03947 ECD_03948: ECD_03948 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG, at 4,200,955 to 4,201,551 _03948 Position (kb) 4198 4199 4200 4201Strain fitness (log2 ratio) -1 0 1at 4198.001 kb on - strand, within ECD_03945at 4198.037 kb on + strand, within ECD_03945at 4198.037 kb on + strand, within ECD_03945at 4198.038 kb on - strand, within ECD_03945at 4198.149 kb on + strand, within ECD_03945at 4198.197 kb on + strand, within ECD_03945at 4198.197 kb on + strand, within ECD_03945at 4198.198 kb on - strand, within ECD_03945at 4198.371 kb on + strand, within ECD_03945at 4198.372 kb on - strand, within ECD_03945at 4198.372 kb on - strand, within ECD_03945at 4198.372 kb on - strand, within ECD_03945at 4198.538 kb on - strand, within ECD_03945at 4198.561 kb on + strand, within ECD_03945at 4198.562 kb on - strand, within ECD_03945at 4198.648 kb on + strand, within ECD_03945at 4198.648 kb on + strand, within ECD_03945at 4198.649 kb on - strand, within ECD_03945at 4198.649 kb on - strand, within ECD_03945at 4198.649 kb on - strand, within ECD_03945at 4198.871 kb on + strandat 4198.872 kb on - strandat 4198.872 kb on - strandat 4198.907 kb on + strandat 4198.907 kb on + strandat 4198.908 kb on - strandat 4199.047 kb on + strandat 4199.047 kb on + strandat 4199.080 kb on + strandat 4199.094 kb on + strand, within ECD_03946at 4199.094 kb on + strand, within ECD_03946at 4199.094 kb on + strand, within ECD_03946at 4199.095 kb on - strand, within ECD_03946at 4199.098 kb on + strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.258 kb on + strand, within ECD_03946at 4199.258 kb on + strand, within ECD_03946at 4199.259 kb on - strand, within ECD_03946at 4199.283 kb on - strand, within ECD_03946at 4199.283 kb on - strand, within ECD_03946at 4199.283 kb on - strand, within ECD_03946at 4199.379 kb on + strand, within ECD_03946at 4199.380 kb on - strand, within ECD_03946at 4199.401 kb on + strand, within ECD_03946at 4199.402 kb on - strand, within ECD_03946at 4199.402 kb on - strand, within ECD_03946at 4199.453 kb on + strand, within ECD_03946at 4199.561 kb on - strand, within ECD_03946at 4199.712 kb on - strand, within ECD_03946at 4199.712 kb on - strand, within ECD_03946at 4199.715 kb on + strand, within ECD_03946at 4199.716 kb on - strand, within ECD_03946at 4199.716 kb on - strand, within ECD_03946at 4199.744 kb on + strand, within ECD_03946at 4199.744 kb on + strand, within ECD_03946at 4199.744 kb on + strand, within ECD_03946at 4199.745 kb on - strand, within ECD_03946at 4199.835 kb on + strand, within ECD_03946at 4199.857 kb on + strand, within ECD_03946at 4199.921 kb on + strand, within ECD_03946at 4199.958 kb on - strand, within ECD_03946at 4200.247 kb on + strand, within ECD_03946at 4200.292 kb on + strand, within ECD_03946at 4200.433 kb on + strandat 4200.484 kb on + strandat 4200.484 kb on + strandat 4200.484 kb on + strandat 4200.484 kb on + strandat 4200.485 kb on - strandat 4200.485 kb on - strandat 4200.485 kb on - strandat 4200.489 kb on - strandat 4200.489 kb on - strandat 4200.489 kb on - strandat 4200.546 kb on - strandat 4200.580 kb on + strandat 4200.606 kb on + strandat 4200.610 kb on + strandat 4200.611 kb on - strandat 4200.637 kb on - strand, within ECD_03947at 4200.655 kb on + strand, within ECD_03947at 4200.686 kb on - strand, within ECD_03947at 4200.700 kb on - strand, within ECD_03947at 4200.760 kb on + strand, within ECD_03947at 4200.854 kb on + strand, within ECD_03947at 4200.854 kb on + strand, within ECD_03947at 4200.855 kb on - strand, within ECD_03947at 4200.912 kb on + strand, within ECD_03947at 4200.913 kb on - strand, within ECD_03947at 4200.915 kb on + strand, within ECD_03947at 4201.001 kb on + strandat 4201.058 kb on + strand, within ECD_03948at 4201.139 kb on + strand, within ECD_03948at 4201.198 kb on + strand, within ECD_03948at 4201.201 kb on + strand, within ECD_03948at 4201.202 kb on - strand, within ECD_03948at 4201.219 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.260 kb on - strand, within ECD_03948at 4201.260 kb on - strand, within ECD_03948at 4201.260 kb on - strand, within ECD_03948at 4201.309 kb on + strand, within ECD_03948at 4201.310 kb on - strand, within ECD_03948at 4201.326 kb on + strand, within ECD_03948at 4201.327 kb on - strand, within ECD_03948at 4201.451 kb on + strand, within ECD_03948at 4201.452 kb on - strand, within ECD_03948at 4201.452 kb on - strand, within ECD_03948at 4201.550 kb on - strandat 4201.571 kb on - strandat 4201.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 264
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4,198,001 - ECD_03945 0.12 -0.2
4,198,037 + ECD_03945 0.16 -0.7
4,198,037 + ECD_03945 0.16 -1.1
4,198,038 - ECD_03945 0.16 +0.2
4,198,149 + ECD_03945 0.27 +0.0
4,198,197 + ECD_03945 0.32 -0.2
4,198,197 + ECD_03945 0.32 +0.2
4,198,198 - ECD_03945 0.32 -0.8
4,198,371 + ECD_03945 0.50 -0.5
4,198,372 - ECD_03945 0.51 +0.7
4,198,372 - ECD_03945 0.51 -1.2
4,198,372 - ECD_03945 0.51 +0.1
4,198,538 - ECD_03945 0.68 +0.6
4,198,561 + ECD_03945 0.70 -0.1
4,198,562 - ECD_03945 0.70 +1.7
4,198,648 + ECD_03945 0.79 +0.1
4,198,648 + ECD_03945 0.79 +0.1
4,198,649 - ECD_03945 0.80 +0.1
4,198,649 - ECD_03945 0.80 +0.6
4,198,649 - ECD_03945 0.80 -0.3
4,198,871 + -0.1
4,198,872 - -0.7
4,198,872 - +0.4
4,198,907 + -0.7
4,198,907 + +0.6
4,198,908 - +0.0
4,199,047 + +1.0
4,199,047 + -0.0
4,199,080 + +0.0
4,199,094 + ECD_03946 0.10 +0.7
4,199,094 + ECD_03946 0.10 +1.4
4,199,094 + ECD_03946 0.10 -0.1
4,199,095 - ECD_03946 0.10 +0.6
4,199,098 + ECD_03946 0.10 +0.1
4,199,099 - ECD_03946 0.11 +0.7
4,199,099 - ECD_03946 0.11 +0.3
4,199,099 - ECD_03946 0.11 +0.3
4,199,099 - ECD_03946 0.11 +0.6
4,199,258 + ECD_03946 0.20 +0.4
4,199,258 + ECD_03946 0.20 +0.0
4,199,259 - ECD_03946 0.20 -0.7
4,199,283 - ECD_03946 0.22 +0.1
4,199,283 - ECD_03946 0.22 +0.6
4,199,283 - ECD_03946 0.22 +0.4
4,199,379 + ECD_03946 0.27 +0.2
4,199,380 - ECD_03946 0.27 -0.3
4,199,401 + ECD_03946 0.29 +1.2
4,199,402 - ECD_03946 0.29 -0.3
4,199,402 - ECD_03946 0.29 +0.5
4,199,453 + ECD_03946 0.32 -0.2
4,199,561 - ECD_03946 0.38 -0.2
4,199,712 - ECD_03946 0.47 +0.6
4,199,712 - ECD_03946 0.47 -0.1
4,199,715 + ECD_03946 0.48 -0.1
4,199,716 - ECD_03946 0.48 +0.4
4,199,716 - ECD_03946 0.48 -1.1
4,199,744 + ECD_03946 0.49 -0.5
4,199,744 + ECD_03946 0.49 -0.1
4,199,744 + ECD_03946 0.49 +0.6
4,199,745 - ECD_03946 0.49 -0.2
4,199,835 + ECD_03946 0.55 +1.0
4,199,857 + ECD_03946 0.56 +0.9
4,199,921 + ECD_03946 0.60 -0.3
4,199,958 - ECD_03946 0.62 +0.5
4,200,247 + ECD_03946 0.80 +0.1
4,200,292 + ECD_03946 0.82 +0.5
4,200,433 + +0.3
4,200,484 + -0.7
4,200,484 + +0.4
4,200,484 + -1.2
4,200,484 + +0.3
4,200,485 - -0.0
4,200,485 - +0.2
4,200,485 - -1.3
4,200,489 - +1.2
4,200,489 - -0.3
4,200,489 - -0.1
4,200,546 - +0.2
4,200,580 + -0.2
4,200,606 + -0.7
4,200,610 + +0.3
4,200,611 - +0.4
4,200,637 - ECD_03947 0.16 +0.2
4,200,655 + ECD_03947 0.21 +0.2
4,200,686 - ECD_03947 0.29 -0.0
4,200,700 - ECD_03947 0.33 -1.6
4,200,760 + ECD_03947 0.48 +0.4
4,200,854 + ECD_03947 0.73 -1.0
4,200,854 + ECD_03947 0.73 -0.2
4,200,855 - ECD_03947 0.73 +0.9
4,200,912 + ECD_03947 0.88 +0.0
4,200,913 - ECD_03947 0.88 +0.5
4,200,915 + ECD_03947 0.89 -0.4
4,201,001 + +0.0
4,201,058 + ECD_03948 0.17 +0.0
4,201,139 + ECD_03948 0.31 +0.5
4,201,198 + ECD_03948 0.41 -0.2
4,201,201 + ECD_03948 0.41 -0.2
4,201,202 - ECD_03948 0.41 +0.6
4,201,219 + ECD_03948 0.44 -1.1
4,201,259 + ECD_03948 0.51 +0.4
4,201,259 + ECD_03948 0.51 -0.2
4,201,259 + ECD_03948 0.51 -0.3
4,201,259 + ECD_03948 0.51 -0.5
4,201,259 + ECD_03948 0.51 -0.4
4,201,259 + ECD_03948 0.51 +0.1
4,201,259 + ECD_03948 0.51 -0.2
4,201,260 - ECD_03948 0.51 -1.0
4,201,260 - ECD_03948 0.51 +0.6
4,201,260 - ECD_03948 0.51 +0.0
4,201,309 + ECD_03948 0.59 +0.1
4,201,310 - ECD_03948 0.59 +0.4
4,201,326 + ECD_03948 0.62 +0.2
4,201,327 - ECD_03948 0.62 -0.4
4,201,451 + ECD_03948 0.83 +0.2
4,201,452 - ECD_03948 0.83 +0.0
4,201,452 - ECD_03948 0.83 -0.9
4,201,550 - -1.1
4,201,571 - +0.2
4,201,571 - -0.5

Or see this region's nucleotide sequence