Strain Fitness in Escherichia coli BL21 around ECD_04026

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04024 and ECD_04025 are separated by 10 nucleotidesECD_04025 and ECD_04026 overlap by 8 nucleotidesECD_04026 and ECD_04027 are separated by 324 nucleotides ECD_04024: ECD_04024 - fumarate reductase (anaerobic), membrane anchor subunit, at 4,286,453 to 4,286,848 _04024 ECD_04025: ECD_04025 - fumarate reductase (anaerobic), Fe-S subunit, at 4,286,859 to 4,287,593 _04025 ECD_04026: ECD_04026 - anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit, at 4,287,586 to 4,289,394 _04026 ECD_04027: ECD_04027 - Elongation Factor P Lys34 lysyltransferase, at 4,289,719 to 4,290,696 _04027 Position (kb) 4287 4288 4289 4290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4286.773 kb on - strand, within ECD_04024at 4286.826 kb on + strandat 4286.826 kb on + strandat 4286.826 kb on + strandat 4286.826 kb on + strandat 4286.827 kb on - strandat 4286.904 kb on + strandat 4286.965 kb on + strand, within ECD_04025at 4286.978 kb on + strand, within ECD_04025at 4286.979 kb on - strand, within ECD_04025at 4286.989 kb on - strand, within ECD_04025at 4287.018 kb on - strand, within ECD_04025at 4287.029 kb on + strand, within ECD_04025at 4287.056 kb on - strand, within ECD_04025at 4287.056 kb on - strand, within ECD_04025at 4287.166 kb on + strand, within ECD_04025at 4287.167 kb on - strand, within ECD_04025at 4287.197 kb on + strand, within ECD_04025at 4287.198 kb on - strand, within ECD_04025at 4287.235 kb on + strand, within ECD_04025at 4287.235 kb on + strand, within ECD_04025at 4287.235 kb on + strand, within ECD_04025at 4287.236 kb on - strand, within ECD_04025at 4287.236 kb on - strand, within ECD_04025at 4287.276 kb on - strand, within ECD_04025at 4287.276 kb on - strand, within ECD_04025at 4287.308 kb on + strand, within ECD_04025at 4287.313 kb on - strand, within ECD_04025at 4287.329 kb on + strand, within ECD_04025at 4287.329 kb on + strand, within ECD_04025at 4287.359 kb on + strand, within ECD_04025at 4287.359 kb on + strand, within ECD_04025at 4287.417 kb on - strand, within ECD_04025at 4287.483 kb on + strand, within ECD_04025at 4287.491 kb on + strand, within ECD_04025at 4287.491 kb on + strand, within ECD_04025at 4287.492 kb on - strand, within ECD_04025at 4287.514 kb on + strand, within ECD_04025at 4287.514 kb on + strand, within ECD_04025at 4287.514 kb on + strand, within ECD_04025at 4287.514 kb on + strand, within ECD_04025at 4287.515 kb on - strand, within ECD_04025at 4287.515 kb on - strand, within ECD_04025at 4287.515 kb on - strand, within ECD_04025at 4287.515 kb on - strand, within ECD_04025at 4287.524 kb on + strandat 4287.553 kb on + strandat 4287.554 kb on - strandat 4287.609 kb on + strandat 4287.664 kb on - strandat 4287.679 kb on - strandat 4287.682 kb on - strandat 4287.682 kb on - strandat 4287.816 kb on + strand, within ECD_04026at 4287.817 kb on - strand, within ECD_04026at 4287.840 kb on + strand, within ECD_04026at 4287.840 kb on + strand, within ECD_04026at 4287.881 kb on + strand, within ECD_04026at 4287.882 kb on - strand, within ECD_04026at 4287.882 kb on - strand, within ECD_04026at 4287.996 kb on - strand, within ECD_04026at 4287.996 kb on - strand, within ECD_04026at 4287.996 kb on - strand, within ECD_04026at 4287.996 kb on - strand, within ECD_04026at 4287.996 kb on - strand, within ECD_04026at 4288.278 kb on + strand, within ECD_04026at 4288.325 kb on + strand, within ECD_04026at 4288.379 kb on + strand, within ECD_04026at 4288.379 kb on + strand, within ECD_04026at 4288.379 kb on + strand, within ECD_04026at 4288.380 kb on - strand, within ECD_04026at 4288.380 kb on - strand, within ECD_04026at 4288.380 kb on - strand, within ECD_04026at 4288.548 kb on + strand, within ECD_04026at 4288.549 kb on - strand, within ECD_04026at 4288.549 kb on - strand, within ECD_04026at 4288.549 kb on - strand, within ECD_04026at 4288.549 kb on - strand, within ECD_04026at 4288.550 kb on + strand, within ECD_04026at 4288.551 kb on - strand, within ECD_04026at 4288.551 kb on - strand, within ECD_04026at 4288.551 kb on - strand, within ECD_04026at 4288.551 kb on - strand, within ECD_04026at 4288.749 kb on + strand, within ECD_04026at 4288.790 kb on + strand, within ECD_04026at 4288.989 kb on + strand, within ECD_04026at 4288.989 kb on + strand, within ECD_04026at 4288.989 kb on + strand, within ECD_04026at 4288.990 kb on - strand, within ECD_04026at 4289.005 kb on - strand, within ECD_04026at 4289.022 kb on + strand, within ECD_04026at 4289.265 kb on + strandat 4289.265 kb on + strandat 4289.290 kb on + strandat 4289.291 kb on - strandat 4289.341 kb on + strandat 4289.363 kb on - strandat 4289.442 kb on - strandat 4289.442 kb on - strandat 4289.473 kb on - strandat 4289.489 kb on - strandat 4289.490 kb on + strandat 4289.491 kb on - strandat 4289.494 kb on + strandat 4289.494 kb on + strandat 4289.495 kb on - strandat 4289.502 kb on + strandat 4289.502 kb on + strandat 4289.503 kb on - strandat 4289.504 kb on + strandat 4289.505 kb on - strandat 4289.505 kb on - strandat 4289.569 kb on - strandat 4289.569 kb on - strandat 4289.589 kb on + strandat 4289.597 kb on - strandat 4289.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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4,286,773 - ECD_04024 0.81 +0.6
4,286,826 + +1.2
4,286,826 + +0.1
4,286,826 + -2.9
4,286,826 + +1.6
4,286,827 - -1.4
4,286,904 + -0.6
4,286,965 + ECD_04025 0.14 -0.5
4,286,978 + ECD_04025 0.16 +0.8
4,286,979 - ECD_04025 0.16 -0.2
4,286,989 - ECD_04025 0.18 -0.4
4,287,018 - ECD_04025 0.22 -1.8
4,287,029 + ECD_04025 0.23 +0.2
4,287,056 - ECD_04025 0.27 -0.7
4,287,056 - ECD_04025 0.27 -0.4
4,287,166 + ECD_04025 0.42 +0.8
4,287,167 - ECD_04025 0.42 -0.9
4,287,197 + ECD_04025 0.46 -0.1
4,287,198 - ECD_04025 0.46 -1.2
4,287,235 + ECD_04025 0.51 +1.5
4,287,235 + ECD_04025 0.51 +0.6
4,287,235 + ECD_04025 0.51 -1.8
4,287,236 - ECD_04025 0.51 +0.6
4,287,236 - ECD_04025 0.51 -0.3
4,287,276 - ECD_04025 0.57 -1.4
4,287,276 - ECD_04025 0.57 +1.6
4,287,308 + ECD_04025 0.61 +0.3
4,287,313 - ECD_04025 0.62 -1.4
4,287,329 + ECD_04025 0.64 -0.7
4,287,329 + ECD_04025 0.64 +0.1
4,287,359 + ECD_04025 0.68 +0.5
4,287,359 + ECD_04025 0.68 -1.1
4,287,417 - ECD_04025 0.76 +0.7
4,287,483 + ECD_04025 0.85 -1.5
4,287,491 + ECD_04025 0.86 +2.0
4,287,491 + ECD_04025 0.86 +0.2
4,287,492 - ECD_04025 0.86 -2.2
4,287,514 + ECD_04025 0.89 +0.6
4,287,514 + ECD_04025 0.89 -0.8
4,287,514 + ECD_04025 0.89 -0.4
4,287,514 + ECD_04025 0.89 -0.8
4,287,515 - ECD_04025 0.89 +0.1
4,287,515 - ECD_04025 0.89 +0.0
4,287,515 - ECD_04025 0.89 -1.0
4,287,515 - ECD_04025 0.89 -0.0
4,287,524 + +1.6
4,287,553 + -1.1
4,287,554 - -0.5
4,287,609 + -1.5
4,287,664 - +0.1
4,287,679 - +0.2
4,287,682 - +1.4
4,287,682 - +0.5
4,287,816 + ECD_04026 0.13 -0.3
4,287,817 - ECD_04026 0.13 -0.3
4,287,840 + ECD_04026 0.14 +2.2
4,287,840 + ECD_04026 0.14 +0.3
4,287,881 + ECD_04026 0.16 +0.0
4,287,882 - ECD_04026 0.16 +2.6
4,287,882 - ECD_04026 0.16 -0.1
4,287,996 - ECD_04026 0.23 +0.6
4,287,996 - ECD_04026 0.23 -0.1
4,287,996 - ECD_04026 0.23 -2.0
4,287,996 - ECD_04026 0.23 +0.2
4,287,996 - ECD_04026 0.23 -0.3
4,288,278 + ECD_04026 0.38 +0.5
4,288,325 + ECD_04026 0.41 -0.5
4,288,379 + ECD_04026 0.44 +1.1
4,288,379 + ECD_04026 0.44 +0.3
4,288,379 + ECD_04026 0.44 -1.3
4,288,380 - ECD_04026 0.44 -0.2
4,288,380 - ECD_04026 0.44 -0.7
4,288,380 - ECD_04026 0.44 -1.3
4,288,548 + ECD_04026 0.53 +0.6
4,288,549 - ECD_04026 0.53 -0.3
4,288,549 - ECD_04026 0.53 +0.5
4,288,549 - ECD_04026 0.53 +0.2
4,288,549 - ECD_04026 0.53 +5.7
4,288,550 + ECD_04026 0.53 -1.7
4,288,551 - ECD_04026 0.53 -0.3
4,288,551 - ECD_04026 0.53 -2.1
4,288,551 - ECD_04026 0.53 -0.0
4,288,551 - ECD_04026 0.53 +1.3
4,288,749 + ECD_04026 0.64 -0.1
4,288,790 + ECD_04026 0.67 +0.2
4,288,989 + ECD_04026 0.78 +2.1
4,288,989 + ECD_04026 0.78 -0.6
4,288,989 + ECD_04026 0.78 -1.0
4,288,990 - ECD_04026 0.78 -0.6
4,289,005 - ECD_04026 0.78 -0.1
4,289,022 + ECD_04026 0.79 -0.8
4,289,265 + -0.3
4,289,265 + +0.4
4,289,290 + -0.5
4,289,291 - -0.3
4,289,341 + -0.2
4,289,363 - -0.3
4,289,442 - +0.5
4,289,442 - +1.1
4,289,473 - -0.4
4,289,489 - -2.1
4,289,490 + -2.6
4,289,491 - +0.4
4,289,494 + +0.7
4,289,494 + +0.9
4,289,495 - +0.2
4,289,502 + -0.3
4,289,502 + -1.0
4,289,503 - +0.1
4,289,504 + -1.1
4,289,505 - +2.2
4,289,505 - +0.5
4,289,569 - -1.1
4,289,569 - +0.7
4,289,589 + -1.0
4,289,597 - +1.0
4,289,682 - +1.9

Or see this region's nucleotide sequence