Strain Fitness in Escherichia coli BL21 around ECD_03390

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03388 and ECD_03389 are separated by 375 nucleotidesECD_03389 and ECD_03390 are separated by 475 nucleotidesECD_03390 and ECD_03391 are separated by 29 nucleotides ECD_03388: ECD_03388 - toxic polypeptide, small, at 3,561,651 to 3,561,758 _03388 ECD_03389: ECD_03389 - toxic polypeptide, small, at 3,562,134 to 3,562,241 _03389 ECD_03390: ECD_03390 - putative transporter, at 3,562,717 to 3,563,988 _03390 ECD_03391: ECD_03391 - dipeptide/heme ABC transporter ATPase, at 3,564,018 to 3,565,022 _03391 Position (kb) 3562 3563 3564Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3561.758 kb on + strandat 3561.760 kb on + strandat 3561.775 kb on + strandat 3561.803 kb on + strandat 3561.804 kb on - strandat 3561.849 kb on - strandat 3561.956 kb on - strandat 3562.258 kb on + strandat 3562.258 kb on + strandat 3562.258 kb on + strandat 3562.278 kb on + strandat 3562.332 kb on - strandat 3562.332 kb on - strandat 3562.332 kb on - strandat 3562.438 kb on + strandat 3562.438 kb on + strandat 3562.500 kb on - strandat 3562.628 kb on + strandat 3562.635 kb on + strandat 3562.716 kb on + strandat 3562.717 kb on - strandat 3562.769 kb on - strandat 3562.787 kb on + strandat 3562.787 kb on + strandat 3562.796 kb on + strandat 3562.796 kb on + strandat 3562.797 kb on - strandat 3562.951 kb on - strand, within ECD_03390at 3562.957 kb on + strand, within ECD_03390at 3562.957 kb on + strand, within ECD_03390at 3562.957 kb on + strand, within ECD_03390at 3562.958 kb on - strand, within ECD_03390at 3562.969 kb on - strand, within ECD_03390at 3562.969 kb on - strand, within ECD_03390at 3562.969 kb on - strand, within ECD_03390at 3563.137 kb on - strand, within ECD_03390at 3563.189 kb on + strand, within ECD_03390at 3563.228 kb on + strand, within ECD_03390at 3563.286 kb on - strand, within ECD_03390at 3563.332 kb on - strand, within ECD_03390at 3563.360 kb on + strand, within ECD_03390at 3563.361 kb on - strand, within ECD_03390at 3563.365 kb on - strand, within ECD_03390at 3563.373 kb on - strand, within ECD_03390at 3563.373 kb on - strand, within ECD_03390at 3563.376 kb on + strand, within ECD_03390at 3563.388 kb on + strand, within ECD_03390at 3563.395 kb on + strand, within ECD_03390at 3563.420 kb on + strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.458 kb on - strand, within ECD_03390at 3563.461 kb on + strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.462 kb on - strand, within ECD_03390at 3563.463 kb on + strand, within ECD_03390at 3563.464 kb on - strand, within ECD_03390at 3563.505 kb on + strand, within ECD_03390at 3563.554 kb on - strand, within ECD_03390at 3563.595 kb on + strand, within ECD_03390at 3563.595 kb on + strand, within ECD_03390at 3563.625 kb on + strand, within ECD_03390at 3563.626 kb on - strand, within ECD_03390at 3563.626 kb on - strand, within ECD_03390at 3563.626 kb on - strand, within ECD_03390at 3563.660 kb on - strand, within ECD_03390at 3563.660 kb on - strand, within ECD_03390at 3563.716 kb on - strand, within ECD_03390at 3563.778 kb on + strand, within ECD_03390at 3563.778 kb on + strand, within ECD_03390at 3563.778 kb on + strand, within ECD_03390at 3563.843 kb on + strand, within ECD_03390at 3563.844 kb on - strand, within ECD_03390at 3563.845 kb on + strand, within ECD_03390at 3563.845 kb on + strand, within ECD_03390at 3563.845 kb on + strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.846 kb on - strand, within ECD_03390at 3563.851 kb on - strand, within ECD_03390at 3563.851 kb on - strand, within ECD_03390at 3563.884 kb on + strandat 3563.884 kb on + strandat 3563.941 kb on + strandat 3563.941 kb on + strandat 3563.954 kb on + strandat 3563.955 kb on - strandat 3563.986 kb on + strandat 3563.987 kb on - strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.085 kb on - strandat 3564.085 kb on - strandat 3564.085 kb on - strandat 3564.174 kb on + strand, within ECD_03391at 3564.240 kb on + strand, within ECD_03391at 3564.316 kb on + strand, within ECD_03391at 3564.317 kb on - strand, within ECD_03391at 3564.317 kb on - strand, within ECD_03391at 3564.371 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.380 kb on - strand, within ECD_03391at 3564.542 kb on + strand, within ECD_03391at 3564.543 kb on - strand, within ECD_03391at 3564.543 kb on - strand, within ECD_03391at 3564.559 kb on + strand, within ECD_03391at 3564.560 kb on - strand, within ECD_03391at 3564.560 kb on - strand, within ECD_03391at 3564.628 kb on - strand, within ECD_03391at 3564.697 kb on + strand, within ECD_03391at 3564.761 kb on + strand, within ECD_03391at 3564.762 kb on - strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.785 kb on - strand, within ECD_03391at 3564.842 kb on + strand, within ECD_03391at 3564.864 kb on + strand, within ECD_03391at 3564.894 kb on - strand, within ECD_03391at 3564.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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3,561,758 + -1.0
3,561,760 + +1.4
3,561,775 + -0.3
3,561,803 + -0.5
3,561,804 - +0.6
3,561,849 - +0.8
3,561,956 - -1.4
3,562,258 + -0.1
3,562,258 + +0.4
3,562,258 + -0.1
3,562,278 + -0.5
3,562,332 - -0.7
3,562,332 - +0.4
3,562,332 - -0.2
3,562,438 + +0.2
3,562,438 + -0.5
3,562,500 - -0.0
3,562,628 + -1.3
3,562,635 + -0.4
3,562,716 + -1.6
3,562,717 - +0.2
3,562,769 - +0.5
3,562,787 + +0.4
3,562,787 + -1.2
3,562,796 + -0.8
3,562,796 + +2.0
3,562,797 - +0.7
3,562,951 - ECD_03390 0.18 +0.5
3,562,957 + ECD_03390 0.19 -0.1
3,562,957 + ECD_03390 0.19 -0.9
3,562,957 + ECD_03390 0.19 -0.4
3,562,958 - ECD_03390 0.19 -0.7
3,562,969 - ECD_03390 0.20 +0.5
3,562,969 - ECD_03390 0.20 -0.3
3,562,969 - ECD_03390 0.20 +0.4
3,563,137 - ECD_03390 0.33 +2.9
3,563,189 + ECD_03390 0.37 -0.2
3,563,228 + ECD_03390 0.40 -0.4
3,563,286 - ECD_03390 0.45 +0.6
3,563,332 - ECD_03390 0.48 +0.7
3,563,360 + ECD_03390 0.51 +0.4
3,563,361 - ECD_03390 0.51 -0.7
3,563,365 - ECD_03390 0.51 -0.7
3,563,373 - ECD_03390 0.52 +0.1
3,563,373 - ECD_03390 0.52 -2.0
3,563,376 + ECD_03390 0.52 -0.7
3,563,388 + ECD_03390 0.53 +0.8
3,563,395 + ECD_03390 0.53 +0.6
3,563,420 + ECD_03390 0.55 +1.0
3,563,458 - ECD_03390 0.58 -0.8
3,563,458 - ECD_03390 0.58 -0.9
3,563,458 - ECD_03390 0.58 +3.5
3,563,458 - ECD_03390 0.58 -0.7
3,563,458 - ECD_03390 0.58 +0.6
3,563,461 + ECD_03390 0.58 +0.2
3,563,462 - ECD_03390 0.59 -0.5
3,563,462 - ECD_03390 0.59 +1.4
3,563,462 - ECD_03390 0.59 -1.4
3,563,462 - ECD_03390 0.59 -0.3
3,563,463 + ECD_03390 0.59 -0.0
3,563,464 - ECD_03390 0.59 -2.3
3,563,505 + ECD_03390 0.62 -0.5
3,563,554 - ECD_03390 0.66 -0.4
3,563,595 + ECD_03390 0.69 +0.5
3,563,595 + ECD_03390 0.69 +1.1
3,563,625 + ECD_03390 0.71 -0.2
3,563,626 - ECD_03390 0.71 +0.9
3,563,626 - ECD_03390 0.71 +0.7
3,563,626 - ECD_03390 0.71 +0.5
3,563,660 - ECD_03390 0.74 +0.6
3,563,660 - ECD_03390 0.74 +0.6
3,563,716 - ECD_03390 0.79 +0.6
3,563,778 + ECD_03390 0.83 +0.8
3,563,778 + ECD_03390 0.83 +3.5
3,563,778 + ECD_03390 0.83 -0.5
3,563,843 + ECD_03390 0.89 -2.1
3,563,844 - ECD_03390 0.89 +1.4
3,563,845 + ECD_03390 0.89 +0.1
3,563,845 + ECD_03390 0.89 -0.9
3,563,845 + ECD_03390 0.89 +1.4
3,563,846 - ECD_03390 0.89 -1.4
3,563,846 - ECD_03390 0.89 -0.1
3,563,846 - ECD_03390 0.89 -0.3
3,563,846 - ECD_03390 0.89 +1.3
3,563,846 - ECD_03390 0.89 -2.4
3,563,851 - ECD_03390 0.89 +1.8
3,563,851 - ECD_03390 0.89 +1.1
3,563,884 + -1.6
3,563,884 + -2.3
3,563,941 + +0.2
3,563,941 + +0.5
3,563,954 + +0.3
3,563,955 - -0.2
3,563,986 + -1.7
3,563,987 - +0.7
3,564,084 + +0.0
3,564,084 + +0.2
3,564,084 + +0.0
3,564,084 + +1.4
3,564,085 - +0.0
3,564,085 - +0.4
3,564,085 - +0.7
3,564,174 + ECD_03391 0.16 +0.9
3,564,240 + ECD_03391 0.22 +0.7
3,564,316 + ECD_03391 0.30 -1.1
3,564,317 - ECD_03391 0.30 +1.0
3,564,317 - ECD_03391 0.30 -0.2
3,564,371 + ECD_03391 0.35 +0.1
3,564,379 + ECD_03391 0.36 +0.1
3,564,379 + ECD_03391 0.36 -1.5
3,564,379 + ECD_03391 0.36 -0.9
3,564,380 - ECD_03391 0.36 -1.0
3,564,542 + ECD_03391 0.52 -0.5
3,564,543 - ECD_03391 0.52 -0.6
3,564,543 - ECD_03391 0.52 -0.0
3,564,559 + ECD_03391 0.54 +0.2
3,564,560 - ECD_03391 0.54 -0.7
3,564,560 - ECD_03391 0.54 -0.5
3,564,628 - ECD_03391 0.61 +0.1
3,564,697 + ECD_03391 0.68 +0.6
3,564,761 + ECD_03391 0.74 -0.9
3,564,762 - ECD_03391 0.74 +0.1
3,564,784 + ECD_03391 0.76 +0.0
3,564,784 + ECD_03391 0.76 -2.1
3,564,784 + ECD_03391 0.76 +1.0
3,564,785 - ECD_03391 0.76 +0.0
3,564,842 + ECD_03391 0.82 -0.3
3,564,864 + ECD_03391 0.84 -0.3
3,564,894 - ECD_03391 0.87 +0.7
3,564,959 - -1.0

Or see this region's nucleotide sequence