Strain Fitness in Escherichia coli BL21 around ECD_03248

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03246 and ECD_03247 overlap by 1 nucleotidesECD_03247 and ECD_03248 are separated by 119 nucleotidesECD_03248 and ECD_03249 are separated by 167 nucleotides ECD_03246: ECD_03246 - DNA catabolic putative fimbrial assembly protein, at 3,381,811 to 3,382,350 _03246 ECD_03247: ECD_03247 - DNA catabolic putative pilus assembly protein, at 3,382,350 to 3,383,129 _03247 ECD_03248: ECD_03248 - penicillin-binding protein 1a, murein transglycosylase and transpeptidase, at 3,383,249 to 3,385,801 _03248 ECD_03249: ECD_03249 - adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP-ribose/NADH hydrolase, at 3,385,969 to 3,386,529 _03249 Position (kb) 3383 3384 3385 3386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3382.355 kb on - strandat 3382.467 kb on + strand, within ECD_03247at 3382.467 kb on + strand, within ECD_03247at 3382.618 kb on - strand, within ECD_03247at 3382.697 kb on + strand, within ECD_03247at 3382.698 kb on - strand, within ECD_03247at 3382.739 kb on + strand, within ECD_03247at 3382.740 kb on - strand, within ECD_03247at 3382.741 kb on + strand, within ECD_03247at 3382.741 kb on + strand, within ECD_03247at 3382.742 kb on - strand, within ECD_03247at 3382.742 kb on - strand, within ECD_03247at 3382.769 kb on - strand, within ECD_03247at 3382.884 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.913 kb on + strand, within ECD_03247at 3382.914 kb on - strand, within ECD_03247at 3382.914 kb on - strand, within ECD_03247at 3382.914 kb on - strand, within ECD_03247at 3382.950 kb on + strand, within ECD_03247at 3382.950 kb on + strand, within ECD_03247at 3382.951 kb on - strand, within ECD_03247at 3382.961 kb on + strand, within ECD_03247at 3383.001 kb on - strand, within ECD_03247at 3383.094 kb on + strandat 3383.094 kb on + strandat 3383.094 kb on + strandat 3383.094 kb on + strandat 3383.167 kb on - strandat 3383.167 kb on - strandat 3383.168 kb on + strandat 3383.169 kb on - strandat 3383.191 kb on + strandat 3383.192 kb on - strandat 3383.192 kb on - strandat 3383.192 kb on - strandat 3383.192 kb on - strandat 3383.193 kb on + strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.194 kb on - strandat 3383.213 kb on + strandat 3383.232 kb on + strandat 3383.259 kb on + strandat 3383.265 kb on - strandat 3383.315 kb on + strandat 3383.322 kb on + strandat 3383.322 kb on + strandat 3383.322 kb on + strandat 3383.323 kb on - strandat 3383.323 kb on - strandat 3383.323 kb on - strandat 3383.324 kb on + strandat 3383.365 kb on - strandat 3383.455 kb on + strandat 3383.519 kb on + strand, within ECD_03248at 3383.519 kb on + strand, within ECD_03248at 3383.519 kb on + strand, within ECD_03248at 3383.605 kb on + strand, within ECD_03248at 3383.605 kb on + strand, within ECD_03248at 3383.605 kb on + strand, within ECD_03248at 3383.606 kb on - strand, within ECD_03248at 3383.606 kb on - strand, within ECD_03248at 3383.665 kb on + strand, within ECD_03248at 3383.672 kb on - strand, within ECD_03248at 3383.735 kb on + strand, within ECD_03248at 3383.736 kb on - strand, within ECD_03248at 3383.750 kb on + strand, within ECD_03248at 3383.768 kb on + strand, within ECD_03248at 3383.768 kb on + strand, within ECD_03248at 3383.769 kb on - strand, within ECD_03248at 3383.796 kb on - strand, within ECD_03248at 3383.796 kb on - strand, within ECD_03248at 3383.796 kb on - strand, within ECD_03248at 3383.886 kb on - strand, within ECD_03248at 3383.948 kb on + strand, within ECD_03248at 3383.948 kb on + strand, within ECD_03248at 3383.948 kb on + strand, within ECD_03248at 3383.948 kb on + strand, within ECD_03248at 3383.948 kb on + strand, within ECD_03248at 3383.949 kb on - strand, within ECD_03248at 3383.949 kb on - strand, within ECD_03248at 3383.950 kb on + strand, within ECD_03248at 3383.951 kb on - strand, within ECD_03248at 3383.951 kb on - strand, within ECD_03248at 3383.993 kb on - strand, within ECD_03248at 3384.002 kb on + strand, within ECD_03248at 3384.003 kb on - strand, within ECD_03248at 3384.065 kb on + strand, within ECD_03248at 3384.065 kb on + strand, within ECD_03248at 3384.065 kb on + strand, within ECD_03248at 3384.065 kb on + strand, within ECD_03248at 3384.066 kb on - strand, within ECD_03248at 3384.066 kb on - strand, within ECD_03248at 3384.066 kb on - strand, within ECD_03248at 3384.066 kb on - strand, within ECD_03248at 3384.066 kb on - strand, within ECD_03248at 3384.066 kb on - strand, within ECD_03248at 3384.089 kb on + strand, within ECD_03248at 3384.110 kb on + strand, within ECD_03248at 3384.110 kb on + strand, within ECD_03248at 3384.110 kb on + strand, within ECD_03248at 3384.111 kb on - strand, within ECD_03248at 3384.156 kb on + strand, within ECD_03248at 3384.157 kb on - strand, within ECD_03248at 3384.160 kb on + strand, within ECD_03248at 3384.160 kb on + strand, within ECD_03248at 3384.161 kb on - strand, within ECD_03248at 3384.161 kb on - strand, within ECD_03248at 3384.161 kb on - strand, within ECD_03248at 3384.163 kb on + strand, within ECD_03248at 3384.164 kb on - strand, within ECD_03248at 3384.164 kb on - strand, within ECD_03248at 3384.176 kb on + strand, within ECD_03248at 3384.176 kb on + strand, within ECD_03248at 3384.176 kb on + strand, within ECD_03248at 3384.176 kb on + strand, within ECD_03248at 3384.284 kb on + strand, within ECD_03248at 3384.284 kb on + strand, within ECD_03248at 3384.284 kb on + strand, within ECD_03248at 3384.284 kb on + strand, within ECD_03248at 3384.284 kb on + strand, within ECD_03248at 3384.284 kb on + strand, within ECD_03248at 3384.284 kb on + strand, within ECD_03248at 3384.436 kb on + strand, within ECD_03248at 3384.437 kb on - strand, within ECD_03248at 3384.662 kb on + strand, within ECD_03248at 3384.663 kb on - strand, within ECD_03248at 3384.700 kb on + strand, within ECD_03248at 3384.700 kb on + strand, within ECD_03248at 3384.700 kb on + strand, within ECD_03248at 3384.700 kb on + strand, within ECD_03248at 3384.700 kb on + strand, within ECD_03248at 3384.700 kb on + strand, within ECD_03248at 3384.700 kb on + strand, within ECD_03248at 3384.701 kb on - strand, within ECD_03248at 3384.701 kb on - strand, within ECD_03248at 3384.701 kb on - strand, within ECD_03248at 3384.701 kb on - strand, within ECD_03248at 3384.701 kb on - strand, within ECD_03248at 3384.779 kb on + strand, within ECD_03248at 3384.780 kb on - strand, within ECD_03248at 3385.021 kb on + strand, within ECD_03248at 3385.021 kb on + strand, within ECD_03248at 3385.021 kb on + strand, within ECD_03248at 3385.096 kb on + strand, within ECD_03248at 3385.109 kb on + strand, within ECD_03248at 3385.109 kb on + strand, within ECD_03248at 3385.110 kb on - strand, within ECD_03248at 3385.117 kb on + strand, within ECD_03248at 3385.118 kb on - strand, within ECD_03248at 3385.118 kb on - strand, within ECD_03248at 3385.166 kb on - strand, within ECD_03248at 3385.257 kb on - strand, within ECD_03248at 3385.298 kb on - strand, within ECD_03248at 3385.318 kb on + strand, within ECD_03248at 3385.319 kb on - strand, within ECD_03248at 3385.319 kb on - strand, within ECD_03248at 3385.319 kb on - strand, within ECD_03248at 3385.439 kb on + strand, within ECD_03248at 3385.493 kb on - strand, within ECD_03248at 3385.504 kb on + strand, within ECD_03248at 3385.526 kb on - strand, within ECD_03248at 3385.586 kb on + strandat 3385.586 kb on + strandat 3385.586 kb on + strandat 3385.587 kb on - strandat 3385.587 kb on - strandat 3385.587 kb on - strandat 3385.588 kb on + strandat 3385.589 kb on - strandat 3385.589 kb on - strandat 3385.680 kb on + strandat 3385.680 kb on + strandat 3385.680 kb on + strandat 3385.681 kb on - strandat 3385.684 kb on + strandat 3385.685 kb on - strandat 3385.911 kb on - strandat 3385.913 kb on - strandat 3385.963 kb on - strandat 3385.971 kb on - strandat 3385.971 kb on - strandat 3386.025 kb on + strand, within ECD_03249at 3386.026 kb on - strand, within ECD_03249at 3386.026 kb on - strand, within ECD_03249at 3386.026 kb on - strand, within ECD_03249at 3386.415 kb on - strand, within ECD_03249at 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.624 kb on - strandat 3386.690 kb on + strandat 3386.713 kb on + strandat 3386.714 kb on - strandat 3386.740 kb on + strandat 3386.794 kb on + strandat 3386.794 kb on + strandat 3386.795 kb on - strandat 3386.795 kb on - strandat 3386.795 kb on - strandat 3386.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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3,382,355 - -0.7
3,382,467 + ECD_03247 0.15 -0.2
3,382,467 + ECD_03247 0.15 +0.3
3,382,618 - ECD_03247 0.34 +0.4
3,382,697 + ECD_03247 0.44 +0.5
3,382,698 - ECD_03247 0.45 -0.2
3,382,739 + ECD_03247 0.50 -0.9
3,382,740 - ECD_03247 0.50 -1.0
3,382,741 + ECD_03247 0.50 -0.1
3,382,741 + ECD_03247 0.50 -0.2
3,382,742 - ECD_03247 0.50 +5.3
3,382,742 - ECD_03247 0.50 +0.4
3,382,769 - ECD_03247 0.54 +0.1
3,382,884 + ECD_03247 0.68 +0.6
3,382,913 + ECD_03247 0.72 +0.0
3,382,913 + ECD_03247 0.72 -1.4
3,382,913 + ECD_03247 0.72 -1.2
3,382,913 + ECD_03247 0.72 +1.4
3,382,914 - ECD_03247 0.72 +0.3
3,382,914 - ECD_03247 0.72 -0.1
3,382,914 - ECD_03247 0.72 -1.6
3,382,950 + ECD_03247 0.77 +1.4
3,382,950 + ECD_03247 0.77 +2.2
3,382,951 - ECD_03247 0.77 +0.8
3,382,961 + ECD_03247 0.78 +2.1
3,383,001 - ECD_03247 0.83 -0.1
3,383,094 + -0.2
3,383,094 + +0.8
3,383,094 + -0.5
3,383,094 + +1.1
3,383,167 - -0.4
3,383,167 - +0.2
3,383,168 + +0.5
3,383,169 - -1.2
3,383,191 + -1.1
3,383,192 - +0.0
3,383,192 - -0.3
3,383,192 - +0.5
3,383,192 - -0.7
3,383,193 + +0.0
3,383,194 - -1.1
3,383,194 - -0.9
3,383,194 - -1.6
3,383,194 - +0.1
3,383,194 - -1.0
3,383,213 + +0.7
3,383,232 + +0.3
3,383,259 + -0.8
3,383,265 - -2.0
3,383,315 + -0.7
3,383,322 + -1.8
3,383,322 + -2.1
3,383,322 + -0.5
3,383,323 - -0.4
3,383,323 - -1.7
3,383,323 - -1.5
3,383,324 + -2.5
3,383,365 - +5.1
3,383,455 + +1.8
3,383,519 + ECD_03248 0.11 -2.1
3,383,519 + ECD_03248 0.11 -1.3
3,383,519 + ECD_03248 0.11 -1.1
3,383,605 + ECD_03248 0.14 -0.8
3,383,605 + ECD_03248 0.14 -0.9
3,383,605 + ECD_03248 0.14 -2.4
3,383,606 - ECD_03248 0.14 -1.0
3,383,606 - ECD_03248 0.14 -2.1
3,383,665 + ECD_03248 0.16 -2.0
3,383,672 - ECD_03248 0.17 -1.9
3,383,735 + ECD_03248 0.19 +0.2
3,383,736 - ECD_03248 0.19 -2.4
3,383,750 + ECD_03248 0.20 -0.1
3,383,768 + ECD_03248 0.20 -0.9
3,383,768 + ECD_03248 0.20 -2.4
3,383,769 - ECD_03248 0.20 -2.4
3,383,796 - ECD_03248 0.21 -0.2
3,383,796 - ECD_03248 0.21 -1.7
3,383,796 - ECD_03248 0.21 -0.7
3,383,886 - ECD_03248 0.25 -1.6
3,383,948 + ECD_03248 0.27 +0.7
3,383,948 + ECD_03248 0.27 -1.3
3,383,948 + ECD_03248 0.27 -1.7
3,383,948 + ECD_03248 0.27 -0.9
3,383,948 + ECD_03248 0.27 +0.5
3,383,949 - ECD_03248 0.27 -1.9
3,383,949 - ECD_03248 0.27 +1.0
3,383,950 + ECD_03248 0.27 -0.3
3,383,951 - ECD_03248 0.27 -2.1
3,383,951 - ECD_03248 0.27 +0.0
3,383,993 - ECD_03248 0.29 -2.1
3,384,002 + ECD_03248 0.29 -1.7
3,384,003 - ECD_03248 0.30 +0.0
3,384,065 + ECD_03248 0.32 -0.7
3,384,065 + ECD_03248 0.32 -1.9
3,384,065 + ECD_03248 0.32 -1.6
3,384,065 + ECD_03248 0.32 -1.0
3,384,066 - ECD_03248 0.32 +0.2
3,384,066 - ECD_03248 0.32 -1.4
3,384,066 - ECD_03248 0.32 -1.9
3,384,066 - ECD_03248 0.32 -0.5
3,384,066 - ECD_03248 0.32 -0.7
3,384,066 - ECD_03248 0.32 -0.7
3,384,089 + ECD_03248 0.33 +0.3
3,384,110 + ECD_03248 0.34 -0.2
3,384,110 + ECD_03248 0.34 +1.3
3,384,110 + ECD_03248 0.34 -0.9
3,384,111 - ECD_03248 0.34 -0.4
3,384,156 + ECD_03248 0.36 -1.6
3,384,157 - ECD_03248 0.36 -2.0
3,384,160 + ECD_03248 0.36 -2.8
3,384,160 + ECD_03248 0.36 -0.9
3,384,161 - ECD_03248 0.36 -0.8
3,384,161 - ECD_03248 0.36 -1.0
3,384,161 - ECD_03248 0.36 -0.8
3,384,163 + ECD_03248 0.36 +0.1
3,384,164 - ECD_03248 0.36 -1.0
3,384,164 - ECD_03248 0.36 -1.0
3,384,176 + ECD_03248 0.36 -1.8
3,384,176 + ECD_03248 0.36 +0.6
3,384,176 + ECD_03248 0.36 -1.2
3,384,176 + ECD_03248 0.36 -2.7
3,384,284 + ECD_03248 0.41 -0.5
3,384,284 + ECD_03248 0.41 -1.5
3,384,284 + ECD_03248 0.41 -2.6
3,384,284 + ECD_03248 0.41 -2.5
3,384,284 + ECD_03248 0.41 +0.2
3,384,284 + ECD_03248 0.41 -1.0
3,384,284 + ECD_03248 0.41 -0.5
3,384,436 + ECD_03248 0.46 -1.4
3,384,437 - ECD_03248 0.47 +0.5
3,384,662 + ECD_03248 0.55 -2.6
3,384,663 - ECD_03248 0.55 -1.2
3,384,700 + ECD_03248 0.57 +1.0
3,384,700 + ECD_03248 0.57 -0.9
3,384,700 + ECD_03248 0.57 +1.1
3,384,700 + ECD_03248 0.57 -2.2
3,384,700 + ECD_03248 0.57 -2.4
3,384,700 + ECD_03248 0.57 -0.1
3,384,700 + ECD_03248 0.57 -0.7
3,384,701 - ECD_03248 0.57 +1.7
3,384,701 - ECD_03248 0.57 -1.6
3,384,701 - ECD_03248 0.57 -0.6
3,384,701 - ECD_03248 0.57 -0.7
3,384,701 - ECD_03248 0.57 -0.8
3,384,779 + ECD_03248 0.60 -1.3
3,384,780 - ECD_03248 0.60 -2.1
3,385,021 + ECD_03248 0.69 -1.4
3,385,021 + ECD_03248 0.69 -3.5
3,385,021 + ECD_03248 0.69 -0.7
3,385,096 + ECD_03248 0.72 -1.9
3,385,109 + ECD_03248 0.73 -3.8
3,385,109 + ECD_03248 0.73 -2.7
3,385,110 - ECD_03248 0.73 -0.9
3,385,117 + ECD_03248 0.73 -2.5
3,385,118 - ECD_03248 0.73 -1.3
3,385,118 - ECD_03248 0.73 -1.1
3,385,166 - ECD_03248 0.75 +0.7
3,385,257 - ECD_03248 0.79 -1.4
3,385,298 - ECD_03248 0.80 -0.5
3,385,318 + ECD_03248 0.81 -1.1
3,385,319 - ECD_03248 0.81 -2.2
3,385,319 - ECD_03248 0.81 +0.2
3,385,319 - ECD_03248 0.81 +0.3
3,385,439 + ECD_03248 0.86 -0.8
3,385,493 - ECD_03248 0.88 -1.0
3,385,504 + ECD_03248 0.88 +0.5
3,385,526 - ECD_03248 0.89 -2.1
3,385,586 + -0.8
3,385,586 + -0.4
3,385,586 + +0.2
3,385,587 - -1.2
3,385,587 - -1.2
3,385,587 - -1.6
3,385,588 + -0.2
3,385,589 - -2.1
3,385,589 - -1.7
3,385,680 + -1.8
3,385,680 + -0.3
3,385,680 + +0.0
3,385,681 - -1.3
3,385,684 + -1.3
3,385,685 - -2.9
3,385,911 - -1.0
3,385,913 - -1.3
3,385,963 - +0.0
3,385,971 - -1.6
3,385,971 - -0.4
3,386,025 + ECD_03249 0.10 +1.2
3,386,026 - ECD_03249 0.10 -1.2
3,386,026 - ECD_03249 0.10 -0.7
3,386,026 - ECD_03249 0.10 -1.7
3,386,415 - ECD_03249 0.80 -0.7
3,386,539 + -1.2
3,386,539 + -0.7
3,386,539 + +2.0
3,386,539 + +0.9
3,386,539 + +0.5
3,386,539 + -1.5
3,386,540 - -0.2
3,386,540 - +0.5
3,386,540 - -0.7
3,386,540 - -1.1
3,386,540 - +1.9
3,386,624 - +1.0
3,386,690 + -0.6
3,386,713 + -1.0
3,386,714 - +0.2
3,386,740 + +1.1
3,386,794 + -0.7
3,386,794 + -0.7
3,386,795 - -1.8
3,386,795 - -0.6
3,386,795 - -0.1
3,386,795 - +1.4

Or see this region's nucleotide sequence