Strain Fitness in Escherichia coli BL21 around ECD_03004

Experiment: Tailocin 256

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03003 and ECD_03004 are separated by 12 nucleotidesECD_03004 and ECD_03005 are separated by 166 nucleotidesECD_03005 and ECD_03006 are separated by 38 nucleotides ECD_03003: ECD_03003 - tagatose-6-phosphate ketose/aldose isomerase, at 3,150,474 to 3,151,628 _03003 ECD_03004: ECD_03004 - tagatose 6-phosphate aldolase 1, kbaY subunit, at 3,151,641 to 3,152,501 _03004 ECD_03005: ECD_03005 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,152,668 to 3,153,144 _03005 ECD_03006: ECD_03006 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,153,183 to 3,153,986 _03006 Position (kb) 3151 3152 3153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3150.707 kb on + strand, within ECD_03003at 3150.766 kb on - strand, within ECD_03003at 3151.159 kb on - strand, within ECD_03003at 3151.246 kb on - strand, within ECD_03003at 3151.246 kb on - strand, within ECD_03003at 3151.312 kb on + strand, within ECD_03003at 3151.312 kb on + strand, within ECD_03003at 3151.313 kb on - strand, within ECD_03003at 3151.313 kb on - strand, within ECD_03003at 3151.344 kb on + strand, within ECD_03003at 3151.345 kb on - strand, within ECD_03003at 3151.345 kb on - strand, within ECD_03003at 3151.445 kb on + strand, within ECD_03003at 3151.445 kb on + strand, within ECD_03003at 3151.445 kb on + strand, within ECD_03003at 3151.445 kb on + strand, within ECD_03003at 3151.445 kb on + strand, within ECD_03003at 3151.445 kb on + strand, within ECD_03003at 3151.445 kb on + strand, within ECD_03003at 3151.446 kb on - strand, within ECD_03003at 3151.446 kb on - strand, within ECD_03003at 3151.446 kb on - strand, within ECD_03003at 3151.446 kb on - strand, within ECD_03003at 3151.446 kb on - strand, within ECD_03003at 3151.446 kb on - strand, within ECD_03003at 3151.446 kb on - strand, within ECD_03003at 3151.448 kb on + strand, within ECD_03003at 3151.449 kb on - strand, within ECD_03003at 3151.449 kb on - strand, within ECD_03003at 3151.506 kb on + strand, within ECD_03003at 3151.507 kb on - strand, within ECD_03003at 3151.551 kb on - strandat 3151.604 kb on - strandat 3151.626 kb on + strandat 3151.626 kb on + strandat 3151.627 kb on - strandat 3151.627 kb on - strandat 3151.627 kb on - strandat 3151.627 kb on - strandat 3151.627 kb on - strandat 3151.640 kb on + strandat 3151.640 kb on + strandat 3151.641 kb on - strandat 3151.641 kb on - strandat 3151.649 kb on + strandat 3151.650 kb on - strandat 3151.650 kb on - strandat 3151.650 kb on - strandat 3151.659 kb on - strandat 3151.710 kb on - strandat 3151.802 kb on + strand, within ECD_03004at 3151.827 kb on + strand, within ECD_03004at 3151.828 kb on - strand, within ECD_03004at 3151.857 kb on + strand, within ECD_03004at 3151.857 kb on + strand, within ECD_03004at 3151.857 kb on + strand, within ECD_03004at 3151.858 kb on - strand, within ECD_03004at 3151.858 kb on - strand, within ECD_03004at 3151.908 kb on - strand, within ECD_03004at 3152.185 kb on + strand, within ECD_03004at 3152.186 kb on - strand, within ECD_03004at 3152.260 kb on + strand, within ECD_03004at 3152.260 kb on + strand, within ECD_03004at 3152.303 kb on + strand, within ECD_03004at 3152.813 kb on + strand, within ECD_03005at 3152.860 kb on - strand, within ECD_03005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
remove
3,150,707 + ECD_03003 0.20 -1.9
3,150,766 - ECD_03003 0.25 -0.5
3,151,159 - ECD_03003 0.59 -1.9
3,151,246 - ECD_03003 0.67 +0.4
3,151,246 - ECD_03003 0.67 -1.5
3,151,312 + ECD_03003 0.73 -1.9
3,151,312 + ECD_03003 0.73 -1.7
3,151,313 - ECD_03003 0.73 -2.2
3,151,313 - ECD_03003 0.73 +1.0
3,151,344 + ECD_03003 0.75 -1.5
3,151,345 - ECD_03003 0.75 -0.3
3,151,345 - ECD_03003 0.75 -1.2
3,151,445 + ECD_03003 0.84 +2.9
3,151,445 + ECD_03003 0.84 -1.0
3,151,445 + ECD_03003 0.84 -0.2
3,151,445 + ECD_03003 0.84 -1.4
3,151,445 + ECD_03003 0.84 -0.8
3,151,445 + ECD_03003 0.84 -2.6
3,151,445 + ECD_03003 0.84 +0.8
3,151,446 - ECD_03003 0.84 -1.4
3,151,446 - ECD_03003 0.84 -0.9
3,151,446 - ECD_03003 0.84 -0.4
3,151,446 - ECD_03003 0.84 -0.8
3,151,446 - ECD_03003 0.84 +0.0
3,151,446 - ECD_03003 0.84 -1.4
3,151,446 - ECD_03003 0.84 +1.1
3,151,448 + ECD_03003 0.84 -1.6
3,151,449 - ECD_03003 0.84 +0.0
3,151,449 - ECD_03003 0.84 +1.1
3,151,506 + ECD_03003 0.89 -1.5
3,151,507 - ECD_03003 0.89 -1.9
3,151,551 - +5.0
3,151,604 - +0.2
3,151,626 + -0.2
3,151,626 + +0.7
3,151,627 - -3.4
3,151,627 - -0.9
3,151,627 - -0.7
3,151,627 - -1.3
3,151,627 - -0.0
3,151,640 + -1.6
3,151,640 + -1.6
3,151,641 - -1.5
3,151,641 - -0.2
3,151,649 + -1.0
3,151,650 - +2.1
3,151,650 - -0.6
3,151,650 - -1.2
3,151,659 - -1.4
3,151,710 - -1.0
3,151,802 + ECD_03004 0.19 -1.5
3,151,827 + ECD_03004 0.22 +0.7
3,151,828 - ECD_03004 0.22 +0.9
3,151,857 + ECD_03004 0.25 -1.6
3,151,857 + ECD_03004 0.25 -0.8
3,151,857 + ECD_03004 0.25 -0.3
3,151,858 - ECD_03004 0.25 +0.9
3,151,858 - ECD_03004 0.25 -0.5
3,151,908 - ECD_03004 0.31 -0.8
3,152,185 + ECD_03004 0.63 -1.5
3,152,186 - ECD_03004 0.63 +0.7
3,152,260 + ECD_03004 0.72 -0.1
3,152,260 + ECD_03004 0.72 -0.3
3,152,303 + ECD_03004 0.77 +0.1
3,152,813 + ECD_03005 0.30 -0.0
3,152,860 - ECD_03005 0.40 -1.2

Or see this region's nucleotide sequence