Experiment: Tailocin 256
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03003 and ECD_03004 are separated by 12 nucleotides ECD_03004 and ECD_03005 are separated by 166 nucleotides ECD_03005 and ECD_03006 are separated by 38 nucleotides
ECD_03003: ECD_03003 - tagatose-6-phosphate ketose/aldose isomerase, at 3,150,474 to 3,151,628
_03003
ECD_03004: ECD_03004 - tagatose 6-phosphate aldolase 1, kbaY subunit, at 3,151,641 to 3,152,501
_03004
ECD_03005: ECD_03005 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,152,668 to 3,153,144
_03005
ECD_03006: ECD_03006 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,153,183 to 3,153,986
_03006
Position (kb)
3151
3152
3153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3150.707 kb on + strand, within ECD_03003 at 3150.766 kb on - strand, within ECD_03003 at 3151.159 kb on - strand, within ECD_03003 at 3151.246 kb on - strand, within ECD_03003 at 3151.246 kb on - strand, within ECD_03003 at 3151.312 kb on + strand, within ECD_03003 at 3151.312 kb on + strand, within ECD_03003 at 3151.313 kb on - strand, within ECD_03003 at 3151.313 kb on - strand, within ECD_03003 at 3151.344 kb on + strand, within ECD_03003 at 3151.345 kb on - strand, within ECD_03003 at 3151.345 kb on - strand, within ECD_03003 at 3151.445 kb on + strand, within ECD_03003 at 3151.445 kb on + strand, within ECD_03003 at 3151.445 kb on + strand, within ECD_03003 at 3151.445 kb on + strand, within ECD_03003 at 3151.445 kb on + strand, within ECD_03003 at 3151.445 kb on + strand, within ECD_03003 at 3151.445 kb on + strand, within ECD_03003 at 3151.446 kb on - strand, within ECD_03003 at 3151.446 kb on - strand, within ECD_03003 at 3151.446 kb on - strand, within ECD_03003 at 3151.446 kb on - strand, within ECD_03003 at 3151.446 kb on - strand, within ECD_03003 at 3151.446 kb on - strand, within ECD_03003 at 3151.446 kb on - strand, within ECD_03003 at 3151.448 kb on + strand, within ECD_03003 at 3151.449 kb on - strand, within ECD_03003 at 3151.449 kb on - strand, within ECD_03003 at 3151.506 kb on + strand, within ECD_03003 at 3151.507 kb on - strand, within ECD_03003 at 3151.551 kb on - strand at 3151.604 kb on - strand at 3151.626 kb on + strand at 3151.626 kb on + strand at 3151.627 kb on - strand at 3151.627 kb on - strand at 3151.627 kb on - strand at 3151.627 kb on - strand at 3151.627 kb on - strand at 3151.640 kb on + strand at 3151.640 kb on + strand at 3151.641 kb on - strand at 3151.641 kb on - strand at 3151.649 kb on + strand at 3151.650 kb on - strand at 3151.650 kb on - strand at 3151.650 kb on - strand at 3151.659 kb on - strand at 3151.710 kb on - strand at 3151.802 kb on + strand, within ECD_03004 at 3151.827 kb on + strand, within ECD_03004 at 3151.828 kb on - strand, within ECD_03004 at 3151.857 kb on + strand, within ECD_03004 at 3151.857 kb on + strand, within ECD_03004 at 3151.857 kb on + strand, within ECD_03004 at 3151.858 kb on - strand, within ECD_03004 at 3151.858 kb on - strand, within ECD_03004 at 3151.908 kb on - strand, within ECD_03004 at 3152.185 kb on + strand, within ECD_03004 at 3152.186 kb on - strand, within ECD_03004 at 3152.260 kb on + strand, within ECD_03004 at 3152.260 kb on + strand, within ECD_03004 at 3152.303 kb on + strand, within ECD_03004 at 3152.813 kb on + strand, within ECD_03005 at 3152.860 kb on - strand, within ECD_03005
Per-strain Table
Position Strand Gene LocusTag Fraction Tailocin 256 remove 3,150,707 + ECD_03003 0.20 -1.9 3,150,766 - ECD_03003 0.25 -0.5 3,151,159 - ECD_03003 0.59 -1.9 3,151,246 - ECD_03003 0.67 +0.4 3,151,246 - ECD_03003 0.67 -1.5 3,151,312 + ECD_03003 0.73 -1.9 3,151,312 + ECD_03003 0.73 -1.7 3,151,313 - ECD_03003 0.73 -2.2 3,151,313 - ECD_03003 0.73 +1.0 3,151,344 + ECD_03003 0.75 -1.5 3,151,345 - ECD_03003 0.75 -0.3 3,151,345 - ECD_03003 0.75 -1.2 3,151,445 + ECD_03003 0.84 +2.9 3,151,445 + ECD_03003 0.84 -1.0 3,151,445 + ECD_03003 0.84 -0.2 3,151,445 + ECD_03003 0.84 -1.4 3,151,445 + ECD_03003 0.84 -0.8 3,151,445 + ECD_03003 0.84 -2.6 3,151,445 + ECD_03003 0.84 +0.8 3,151,446 - ECD_03003 0.84 -1.4 3,151,446 - ECD_03003 0.84 -0.9 3,151,446 - ECD_03003 0.84 -0.4 3,151,446 - ECD_03003 0.84 -0.8 3,151,446 - ECD_03003 0.84 +0.0 3,151,446 - ECD_03003 0.84 -1.4 3,151,446 - ECD_03003 0.84 +1.1 3,151,448 + ECD_03003 0.84 -1.6 3,151,449 - ECD_03003 0.84 +0.0 3,151,449 - ECD_03003 0.84 +1.1 3,151,506 + ECD_03003 0.89 -1.5 3,151,507 - ECD_03003 0.89 -1.9 3,151,551 - +5.0 3,151,604 - +0.2 3,151,626 + -0.2 3,151,626 + +0.7 3,151,627 - -3.4 3,151,627 - -0.9 3,151,627 - -0.7 3,151,627 - -1.3 3,151,627 - -0.0 3,151,640 + -1.6 3,151,640 + -1.6 3,151,641 - -1.5 3,151,641 - -0.2 3,151,649 + -1.0 3,151,650 - +2.1 3,151,650 - -0.6 3,151,650 - -1.2 3,151,659 - -1.4 3,151,710 - -1.0 3,151,802 + ECD_03004 0.19 -1.5 3,151,827 + ECD_03004 0.22 +0.7 3,151,828 - ECD_03004 0.22 +0.9 3,151,857 + ECD_03004 0.25 -1.6 3,151,857 + ECD_03004 0.25 -0.8 3,151,857 + ECD_03004 0.25 -0.3 3,151,858 - ECD_03004 0.25 +0.9 3,151,858 - ECD_03004 0.25 -0.5 3,151,908 - ECD_03004 0.31 -0.8 3,152,185 + ECD_03004 0.63 -1.5 3,152,186 - ECD_03004 0.63 +0.7 3,152,260 + ECD_03004 0.72 -0.1 3,152,260 + ECD_03004 0.72 -0.3 3,152,303 + ECD_03004 0.77 +0.1 3,152,813 + ECD_03005 0.30 -0.0 3,152,860 - ECD_03005 0.40 -1.2
Or see this region's nucleotide sequence