Strain Fitness in Escherichia coli BL21 around ECD_02838

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02837 and ECD_02838 overlap by 1 nucleotidesECD_02838 and ECD_02839 are separated by 29 nucleotides ECD_02837: ECD_02837 - putative type II secretion protein GspE, at 2,968,788 to 2,970,281 _02837 ECD_02838: ECD_02838 - putative type II secretion protein GspD, at 2,970,281 to 2,972,341 _02838 ECD_02839: ECD_02839 - putative secretion pathway protein, C-type protein, at 2,972,371 to 2,973,201 _02839 Position (kb) 2970 2971 2972 2973Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.314 kb on - strand, within ECD_02837at 2969.314 kb on - strand, within ECD_02837at 2969.411 kb on - strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2970.251 kb on + strandat 2970.270 kb on + strandat 2970.271 kb on - strandat 2970.381 kb on - strandat 2970.420 kb on + strandat 2970.420 kb on + strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.424 kb on + strandat 2970.427 kb on - strandat 2970.734 kb on + strand, within ECD_02838at 2970.835 kb on + strand, within ECD_02838at 2970.926 kb on - strand, within ECD_02838at 2971.055 kb on + strand, within ECD_02838at 2971.055 kb on + strand, within ECD_02838at 2971.063 kb on + strand, within ECD_02838at 2971.211 kb on - strand, within ECD_02838at 2971.339 kb on + strand, within ECD_02838at 2971.340 kb on - strand, within ECD_02838at 2971.340 kb on - strand, within ECD_02838at 2971.340 kb on - strand, within ECD_02838at 2971.443 kb on - strand, within ECD_02838at 2971.792 kb on + strand, within ECD_02838at 2971.792 kb on + strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.816 kb on + strand, within ECD_02838at 2971.817 kb on - strand, within ECD_02838at 2971.888 kb on + strand, within ECD_02838at 2971.888 kb on + strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.893 kb on - strand, within ECD_02838at 2971.901 kb on + strand, within ECD_02838at 2971.929 kb on + strand, within ECD_02838at 2971.930 kb on - strand, within ECD_02838at 2972.018 kb on + strand, within ECD_02838at 2972.029 kb on - strand, within ECD_02838at 2972.057 kb on + strand, within ECD_02838at 2972.057 kb on + strand, within ECD_02838at 2972.058 kb on - strand, within ECD_02838at 2972.064 kb on + strand, within ECD_02838at 2972.065 kb on - strand, within ECD_02838at 2972.068 kb on - strand, within ECD_02838at 2972.323 kb on + strandat 2972.324 kb on - strandat 2972.324 kb on - strandat 2972.324 kb on - strandat 2972.413 kb on + strandat 2972.414 kb on - strandat 2972.447 kb on - strandat 2972.447 kb on - strandat 2972.595 kb on + strand, within ECD_02839at 2972.596 kb on - strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.805 kb on - strand, within ECD_02839at 2972.879 kb on + strand, within ECD_02839at 2972.880 kb on - strand, within ECD_02839at 2972.955 kb on + strand, within ECD_02839at 2972.956 kb on - strand, within ECD_02839at 2972.996 kb on - strand, within ECD_02839at 2973.018 kb on - strand, within ECD_02839at 2973.046 kb on + strand, within ECD_02839at 2973.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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2,969,313 + ECD_02837 0.35 -3.1
2,969,313 + ECD_02837 0.35 -1.3
2,969,313 + ECD_02837 0.35 -0.6
2,969,313 + ECD_02837 0.35 -2.6
2,969,314 - ECD_02837 0.35 -1.3
2,969,314 - ECD_02837 0.35 -0.7
2,969,411 - ECD_02837 0.42 -2.2
2,969,817 + ECD_02837 0.69 -1.2
2,969,817 + ECD_02837 0.69 +1.5
2,969,817 + ECD_02837 0.69 -1.1
2,969,817 + ECD_02837 0.69 +0.3
2,969,818 - ECD_02837 0.69 -3.0
2,969,818 - ECD_02837 0.69 -1.2
2,969,818 - ECD_02837 0.69 -1.7
2,969,818 - ECD_02837 0.69 -2.8
2,969,818 - ECD_02837 0.69 -1.3
2,970,251 + -1.4
2,970,270 + -3.2
2,970,271 - -2.7
2,970,381 - -0.8
2,970,420 + -1.4
2,970,420 + -1.2
2,970,421 - -2.5
2,970,421 - -2.4
2,970,421 - -2.1
2,970,421 - -0.3
2,970,421 - +0.2
2,970,424 + -2.9
2,970,427 - -2.1
2,970,734 + ECD_02838 0.22 -1.9
2,970,835 + ECD_02838 0.27 -3.3
2,970,926 - ECD_02838 0.31 -0.1
2,971,055 + ECD_02838 0.38 -3.2
2,971,055 + ECD_02838 0.38 -3.1
2,971,063 + ECD_02838 0.38 -1.8
2,971,211 - ECD_02838 0.45 -1.1
2,971,339 + ECD_02838 0.51 -3.8
2,971,340 - ECD_02838 0.51 -1.0
2,971,340 - ECD_02838 0.51 -2.7
2,971,340 - ECD_02838 0.51 -1.8
2,971,443 - ECD_02838 0.56 +0.5
2,971,792 + ECD_02838 0.73 -1.6
2,971,792 + ECD_02838 0.73 -1.7
2,971,793 - ECD_02838 0.73 -3.1
2,971,793 - ECD_02838 0.73 -2.2
2,971,793 - ECD_02838 0.73 -3.1
2,971,816 + ECD_02838 0.74 -1.5
2,971,817 - ECD_02838 0.75 -1.0
2,971,888 + ECD_02838 0.78 -0.7
2,971,888 + ECD_02838 0.78 -2.8
2,971,889 - ECD_02838 0.78 -1.1
2,971,889 - ECD_02838 0.78 -1.5
2,971,889 - ECD_02838 0.78 -1.5
2,971,893 - ECD_02838 0.78 +0.7
2,971,901 + ECD_02838 0.79 -1.2
2,971,929 + ECD_02838 0.80 -1.1
2,971,930 - ECD_02838 0.80 -2.0
2,972,018 + ECD_02838 0.84 -0.4
2,972,029 - ECD_02838 0.85 -3.4
2,972,057 + ECD_02838 0.86 +0.1
2,972,057 + ECD_02838 0.86 -0.7
2,972,058 - ECD_02838 0.86 -2.0
2,972,064 + ECD_02838 0.87 -2.1
2,972,065 - ECD_02838 0.87 -0.8
2,972,068 - ECD_02838 0.87 -1.1
2,972,323 + -1.4
2,972,324 - +0.1
2,972,324 - -1.3
2,972,324 - +0.6
2,972,413 + -1.0
2,972,414 - -2.6
2,972,447 - +0.2
2,972,447 - -1.7
2,972,595 + ECD_02839 0.27 -1.3
2,972,596 - ECD_02839 0.27 -1.2
2,972,618 + ECD_02839 0.30 -1.4
2,972,618 + ECD_02839 0.30 -3.0
2,972,618 + ECD_02839 0.30 -0.9
2,972,619 - ECD_02839 0.30 -2.3
2,972,619 - ECD_02839 0.30 +0.1
2,972,619 - ECD_02839 0.30 -2.7
2,972,619 - ECD_02839 0.30 +0.8
2,972,805 - ECD_02839 0.52 -0.1
2,972,879 + ECD_02839 0.61 -1.8
2,972,880 - ECD_02839 0.61 -1.3
2,972,955 + ECD_02839 0.70 -3.5
2,972,956 - ECD_02839 0.70 -1.0
2,972,996 - ECD_02839 0.75 +1.1
2,973,018 - ECD_02839 0.78 -0.6
2,973,046 + ECD_02839 0.81 -0.3
2,973,142 - +0.4

Or see this region's nucleotide sequence