Experiment: Tailocin 256
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02826 and ECD_02827 are separated by 208 nucleotides ECD_02827 and ECD_02828 are separated by 14 nucleotides
ECD_02826: ECD_02826 - hypothetical protein, at 2,958,773 to 2,960,149
_02826
ECD_02827: ECD_02827 - Polysialic acid transport ATP-binding KpsT, at 2,960,358 to 2,961,017
_02827
ECD_02828: ECD_02828 - Polysialic acid transport protein kpsM, at 2,961,032 to 2,961,808
_02828
Position (kb)
2960
2961
2962 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2960.980 kb on + strand at 2961.093 kb on - strand at 2961.115 kb on - strand, within ECD_02828 at 2961.142 kb on - strand, within ECD_02828 at 2961.151 kb on + strand, within ECD_02828 at 2961.167 kb on + strand, within ECD_02828 at 2961.182 kb on + strand, within ECD_02828 at 2961.182 kb on + strand, within ECD_02828 at 2961.182 kb on + strand, within ECD_02828 at 2961.183 kb on - strand, within ECD_02828 at 2961.200 kb on + strand, within ECD_02828 at 2961.201 kb on - strand, within ECD_02828 at 2961.445 kb on + strand, within ECD_02828 at 2961.445 kb on + strand, within ECD_02828 at 2961.523 kb on + strand, within ECD_02828 at 2961.523 kb on + strand, within ECD_02828 at 2961.554 kb on + strand, within ECD_02828 at 2961.609 kb on - strand, within ECD_02828 at 2961.649 kb on + strand, within ECD_02828 at 2961.747 kb on - strand at 2961.881 kb on - strand at 2961.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tailocin 256 remove 2,960,980 + -2.8 2,961,093 - -2.7 2,961,115 - ECD_02828 0.11 -3.6 2,961,142 - ECD_02828 0.14 -0.8 2,961,151 + ECD_02828 0.15 +0.7 2,961,167 + ECD_02828 0.17 -1.6 2,961,182 + ECD_02828 0.19 -2.2 2,961,182 + ECD_02828 0.19 -2.6 2,961,182 + ECD_02828 0.19 -1.0 2,961,183 - ECD_02828 0.19 -1.4 2,961,200 + ECD_02828 0.22 +0.4 2,961,201 - ECD_02828 0.22 -0.6 2,961,445 + ECD_02828 0.53 -0.5 2,961,445 + ECD_02828 0.53 -2.0 2,961,523 + ECD_02828 0.63 -3.6 2,961,523 + ECD_02828 0.63 -1.7 2,961,554 + ECD_02828 0.67 -3.1 2,961,609 - ECD_02828 0.74 -2.8 2,961,649 + ECD_02828 0.79 -3.0 2,961,747 - -3.0 2,961,881 - -1.6 2,961,935 - -1.8
Or see this region's nucleotide sequence