Strain Fitness in Escherichia coli BL21 around ECD_02818

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02816 and ECD_02817 are separated by 9 nucleotidesECD_02817 and ECD_02818 overlap by 4 nucleotidesECD_02818 and ECD_02819 are separated by 34 nucleotides ECD_02816: ECD_02816 - KpsD protein, at 2,947,927 to 2,949,603 _02816 ECD_02817: ECD_02817 - KpsU protein, at 2,949,613 to 2,950,353 _02817 ECD_02818: ECD_02818 - Capsule polysaccharide export protein KpsC, at 2,950,350 to 2,952,377 _02818 ECD_02819: ECD_02819 - KpsS protein, at 2,952,412 to 2,953,644 _02819 Position (kb) 2950 2951 2952 2953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2949.377 kb on - strand, within ECD_02816at 2949.427 kb on - strand, within ECD_02816at 2949.537 kb on + strandat 2949.562 kb on + strandat 2949.601 kb on + strandat 2949.627 kb on + strandat 2949.669 kb on + strandat 2949.716 kb on - strand, within ECD_02817at 2949.728 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.886 kb on - strand, within ECD_02817at 2949.889 kb on + strand, within ECD_02817at 2949.889 kb on + strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.894 kb on + strand, within ECD_02817at 2949.935 kb on + strand, within ECD_02817at 2949.936 kb on - strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2950.046 kb on + strand, within ECD_02817at 2950.050 kb on + strand, within ECD_02817at 2950.101 kb on + strand, within ECD_02817at 2950.101 kb on + strand, within ECD_02817at 2950.138 kb on - strand, within ECD_02817at 2950.141 kb on + strand, within ECD_02817at 2950.142 kb on - strand, within ECD_02817at 2950.142 kb on - strand, within ECD_02817at 2950.626 kb on + strand, within ECD_02818at 2950.626 kb on + strand, within ECD_02818at 2950.629 kb on + strand, within ECD_02818at 2950.823 kb on + strand, within ECD_02818at 2950.823 kb on + strand, within ECD_02818at 2950.823 kb on + strand, within ECD_02818at 2950.824 kb on - strand, within ECD_02818at 2950.829 kb on + strand, within ECD_02818at 2950.843 kb on - strand, within ECD_02818at 2951.127 kb on + strand, within ECD_02818at 2951.226 kb on + strand, within ECD_02818at 2951.226 kb on + strand, within ECD_02818at 2951.244 kb on + strand, within ECD_02818at 2951.244 kb on + strand, within ECD_02818at 2951.269 kb on + strand, within ECD_02818at 2951.278 kb on + strand, within ECD_02818at 2951.279 kb on - strand, within ECD_02818at 2951.305 kb on + strand, within ECD_02818at 2951.432 kb on + strand, within ECD_02818at 2951.432 kb on + strand, within ECD_02818at 2951.464 kb on + strand, within ECD_02818at 2951.607 kb on + strand, within ECD_02818at 2951.608 kb on - strand, within ECD_02818at 2951.608 kb on - strand, within ECD_02818at 2951.610 kb on + strand, within ECD_02818at 2951.610 kb on + strand, within ECD_02818at 2951.718 kb on - strand, within ECD_02818at 2951.901 kb on - strand, within ECD_02818at 2951.923 kb on + strand, within ECD_02818at 2951.924 kb on - strand, within ECD_02818at 2952.073 kb on + strand, within ECD_02818at 2952.073 kb on + strand, within ECD_02818at 2952.236 kb on - strandat 2952.246 kb on - strandat 2952.246 kb on - strandat 2952.583 kb on + strand, within ECD_02819at 2952.849 kb on + strand, within ECD_02819at 2952.850 kb on - strand, within ECD_02819at 2952.899 kb on + strand, within ECD_02819at 2952.899 kb on + strand, within ECD_02819at 2952.899 kb on + strand, within ECD_02819at 2952.917 kb on - strand, within ECD_02819at 2952.919 kb on + strand, within ECD_02819at 2953.093 kb on + strand, within ECD_02819at 2953.094 kb on - strand, within ECD_02819at 2953.094 kb on - strand, within ECD_02819at 2953.149 kb on + strand, within ECD_02819at 2953.167 kb on + strand, within ECD_02819at 2953.167 kb on + strand, within ECD_02819

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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2,949,377 - ECD_02816 0.86 -3.6
2,949,427 - ECD_02816 0.89 -0.9
2,949,537 + -2.6
2,949,562 + -2.3
2,949,601 + -2.6
2,949,627 + -2.5
2,949,669 + -1.6
2,949,716 - ECD_02817 0.14 -2.7
2,949,728 + ECD_02817 0.16 -0.9
2,949,870 + ECD_02817 0.35 -1.2
2,949,870 + ECD_02817 0.35 -2.8
2,949,870 + ECD_02817 0.35 -1.4
2,949,871 - ECD_02817 0.35 -1.5
2,949,871 - ECD_02817 0.35 -3.2
2,949,871 - ECD_02817 0.35 -0.2
2,949,885 + ECD_02817 0.37 -0.7
2,949,885 + ECD_02817 0.37 -1.3
2,949,885 + ECD_02817 0.37 -1.6
2,949,886 - ECD_02817 0.37 +0.9
2,949,889 + ECD_02817 0.37 -0.4
2,949,889 + ECD_02817 0.37 -2.6
2,949,890 - ECD_02817 0.37 -0.4
2,949,890 - ECD_02817 0.37 -1.4
2,949,890 - ECD_02817 0.37 -1.0
2,949,894 + ECD_02817 0.38 -2.2
2,949,935 + ECD_02817 0.43 -1.1
2,949,936 - ECD_02817 0.44 -1.3
2,949,947 + ECD_02817 0.45 -2.3
2,949,947 + ECD_02817 0.45 -2.8
2,949,947 + ECD_02817 0.45 -1.6
2,949,947 + ECD_02817 0.45 -2.2
2,950,046 + ECD_02817 0.58 -1.1
2,950,050 + ECD_02817 0.59 +0.1
2,950,101 + ECD_02817 0.66 -3.1
2,950,101 + ECD_02817 0.66 -1.5
2,950,138 - ECD_02817 0.71 -2.4
2,950,141 + ECD_02817 0.71 -1.3
2,950,142 - ECD_02817 0.71 -2.1
2,950,142 - ECD_02817 0.71 -1.4
2,950,626 + ECD_02818 0.14 -1.4
2,950,626 + ECD_02818 0.14 -2.6
2,950,629 + ECD_02818 0.14 -1.9
2,950,823 + ECD_02818 0.23 -1.7
2,950,823 + ECD_02818 0.23 -3.0
2,950,823 + ECD_02818 0.23 -1.6
2,950,824 - ECD_02818 0.23 -2.3
2,950,829 + ECD_02818 0.24 -2.7
2,950,843 - ECD_02818 0.24 -0.9
2,951,127 + ECD_02818 0.38 -0.5
2,951,226 + ECD_02818 0.43 -1.6
2,951,226 + ECD_02818 0.43 -1.4
2,951,244 + ECD_02818 0.44 -0.6
2,951,244 + ECD_02818 0.44 -2.1
2,951,269 + ECD_02818 0.45 +0.2
2,951,278 + ECD_02818 0.46 -3.0
2,951,279 - ECD_02818 0.46 -1.3
2,951,305 + ECD_02818 0.47 -2.6
2,951,432 + ECD_02818 0.53 -0.5
2,951,432 + ECD_02818 0.53 -2.3
2,951,464 + ECD_02818 0.55 -2.7
2,951,607 + ECD_02818 0.62 -2.3
2,951,608 - ECD_02818 0.62 -0.9
2,951,608 - ECD_02818 0.62 -1.4
2,951,610 + ECD_02818 0.62 +3.3
2,951,610 + ECD_02818 0.62 -1.3
2,951,718 - ECD_02818 0.67 -1.2
2,951,901 - ECD_02818 0.76 -2.4
2,951,923 + ECD_02818 0.78 -1.5
2,951,924 - ECD_02818 0.78 -3.1
2,952,073 + ECD_02818 0.85 -0.7
2,952,073 + ECD_02818 0.85 -1.9
2,952,236 - -1.9
2,952,246 - -0.7
2,952,246 - -2.6
2,952,583 + ECD_02819 0.14 -1.4
2,952,849 + ECD_02819 0.35 -1.8
2,952,850 - ECD_02819 0.36 -1.9
2,952,899 + ECD_02819 0.39 -1.9
2,952,899 + ECD_02819 0.39 -0.4
2,952,899 + ECD_02819 0.39 -2.3
2,952,917 - ECD_02819 0.41 +0.6
2,952,919 + ECD_02819 0.41 -3.0
2,953,093 + ECD_02819 0.55 -0.5
2,953,094 - ECD_02819 0.55 +0.8
2,953,094 - ECD_02819 0.55 -1.6
2,953,149 + ECD_02819 0.60 -3.0
2,953,167 + ECD_02819 0.61 -1.1
2,953,167 + ECD_02819 0.61 -1.1

Or see this region's nucleotide sequence