Strain Fitness in Escherichia coli BL21 around ECD_02817

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02816 and ECD_02817 are separated by 9 nucleotidesECD_02817 and ECD_02818 overlap by 4 nucleotides ECD_02816: ECD_02816 - KpsD protein, at 2,947,927 to 2,949,603 _02816 ECD_02817: ECD_02817 - KpsU protein, at 2,949,613 to 2,950,353 _02817 ECD_02818: ECD_02818 - Capsule polysaccharide export protein KpsC, at 2,950,350 to 2,952,377 _02818 Position (kb) 2949 2950 2951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2948.677 kb on - strand, within ECD_02816at 2948.710 kb on + strand, within ECD_02816at 2948.793 kb on + strand, within ECD_02816at 2948.833 kb on + strand, within ECD_02816at 2948.834 kb on - strand, within ECD_02816at 2948.862 kb on + strand, within ECD_02816at 2948.863 kb on - strand, within ECD_02816at 2948.885 kb on + strand, within ECD_02816at 2948.964 kb on - strand, within ECD_02816at 2948.971 kb on + strand, within ECD_02816at 2948.972 kb on - strand, within ECD_02816at 2948.983 kb on - strand, within ECD_02816at 2949.285 kb on + strand, within ECD_02816at 2949.285 kb on + strand, within ECD_02816at 2949.377 kb on - strand, within ECD_02816at 2949.427 kb on - strand, within ECD_02816at 2949.537 kb on + strandat 2949.562 kb on + strandat 2949.601 kb on + strandat 2949.627 kb on + strandat 2949.669 kb on + strandat 2949.716 kb on - strand, within ECD_02817at 2949.728 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.886 kb on - strand, within ECD_02817at 2949.889 kb on + strand, within ECD_02817at 2949.889 kb on + strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.894 kb on + strand, within ECD_02817at 2949.935 kb on + strand, within ECD_02817at 2949.936 kb on - strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2950.046 kb on + strand, within ECD_02817at 2950.050 kb on + strand, within ECD_02817at 2950.101 kb on + strand, within ECD_02817at 2950.101 kb on + strand, within ECD_02817at 2950.138 kb on - strand, within ECD_02817at 2950.141 kb on + strand, within ECD_02817at 2950.142 kb on - strand, within ECD_02817at 2950.142 kb on - strand, within ECD_02817at 2950.626 kb on + strand, within ECD_02818at 2950.626 kb on + strand, within ECD_02818at 2950.629 kb on + strand, within ECD_02818at 2950.823 kb on + strand, within ECD_02818at 2950.823 kb on + strand, within ECD_02818at 2950.823 kb on + strand, within ECD_02818at 2950.824 kb on - strand, within ECD_02818at 2950.829 kb on + strand, within ECD_02818at 2950.843 kb on - strand, within ECD_02818at 2951.127 kb on + strand, within ECD_02818at 2951.226 kb on + strand, within ECD_02818at 2951.226 kb on + strand, within ECD_02818at 2951.244 kb on + strand, within ECD_02818at 2951.244 kb on + strand, within ECD_02818at 2951.269 kb on + strand, within ECD_02818at 2951.278 kb on + strand, within ECD_02818at 2951.279 kb on - strand, within ECD_02818at 2951.305 kb on + strand, within ECD_02818

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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2,948,677 - ECD_02816 0.45 +2.0
2,948,710 + ECD_02816 0.47 -1.2
2,948,793 + ECD_02816 0.52 -1.1
2,948,833 + ECD_02816 0.54 -1.8
2,948,834 - ECD_02816 0.54 -0.7
2,948,862 + ECD_02816 0.56 -4.2
2,948,863 - ECD_02816 0.56 -1.2
2,948,885 + ECD_02816 0.57 -1.2
2,948,964 - ECD_02816 0.62 -1.6
2,948,971 + ECD_02816 0.62 -1.4
2,948,972 - ECD_02816 0.62 +0.2
2,948,983 - ECD_02816 0.63 -0.9
2,949,285 + ECD_02816 0.81 -1.9
2,949,285 + ECD_02816 0.81 -1.5
2,949,377 - ECD_02816 0.86 -3.6
2,949,427 - ECD_02816 0.89 -0.9
2,949,537 + -2.6
2,949,562 + -2.3
2,949,601 + -2.6
2,949,627 + -2.5
2,949,669 + -1.6
2,949,716 - ECD_02817 0.14 -2.7
2,949,728 + ECD_02817 0.16 -0.9
2,949,870 + ECD_02817 0.35 -1.2
2,949,870 + ECD_02817 0.35 -2.8
2,949,870 + ECD_02817 0.35 -1.4
2,949,871 - ECD_02817 0.35 -1.5
2,949,871 - ECD_02817 0.35 -3.2
2,949,871 - ECD_02817 0.35 -0.2
2,949,885 + ECD_02817 0.37 -0.7
2,949,885 + ECD_02817 0.37 -1.3
2,949,885 + ECD_02817 0.37 -1.6
2,949,886 - ECD_02817 0.37 +0.9
2,949,889 + ECD_02817 0.37 -0.4
2,949,889 + ECD_02817 0.37 -2.6
2,949,890 - ECD_02817 0.37 -0.4
2,949,890 - ECD_02817 0.37 -1.4
2,949,890 - ECD_02817 0.37 -1.0
2,949,894 + ECD_02817 0.38 -2.2
2,949,935 + ECD_02817 0.43 -1.1
2,949,936 - ECD_02817 0.44 -1.3
2,949,947 + ECD_02817 0.45 -2.3
2,949,947 + ECD_02817 0.45 -2.8
2,949,947 + ECD_02817 0.45 -1.6
2,949,947 + ECD_02817 0.45 -2.2
2,950,046 + ECD_02817 0.58 -1.1
2,950,050 + ECD_02817 0.59 +0.1
2,950,101 + ECD_02817 0.66 -3.1
2,950,101 + ECD_02817 0.66 -1.5
2,950,138 - ECD_02817 0.71 -2.4
2,950,141 + ECD_02817 0.71 -1.3
2,950,142 - ECD_02817 0.71 -2.1
2,950,142 - ECD_02817 0.71 -1.4
2,950,626 + ECD_02818 0.14 -1.4
2,950,626 + ECD_02818 0.14 -2.6
2,950,629 + ECD_02818 0.14 -1.9
2,950,823 + ECD_02818 0.23 -1.7
2,950,823 + ECD_02818 0.23 -3.0
2,950,823 + ECD_02818 0.23 -1.6
2,950,824 - ECD_02818 0.23 -2.3
2,950,829 + ECD_02818 0.24 -2.7
2,950,843 - ECD_02818 0.24 -0.9
2,951,127 + ECD_02818 0.38 -0.5
2,951,226 + ECD_02818 0.43 -1.6
2,951,226 + ECD_02818 0.43 -1.4
2,951,244 + ECD_02818 0.44 -0.6
2,951,244 + ECD_02818 0.44 -2.1
2,951,269 + ECD_02818 0.45 +0.2
2,951,278 + ECD_02818 0.46 -3.0
2,951,279 - ECD_02818 0.46 -1.3
2,951,305 + ECD_02818 0.47 -2.6

Or see this region's nucleotide sequence