Strain Fitness in Escherichia coli BL21 around ECD_02815

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02814 and ECD_02815 are separated by 83 nucleotidesECD_02815 and ECD_02816 are separated by 23 nucleotides ECD_02814: ECD_02814 - hypothetical protein, at 2,945,664 to 2,946,683 _02814 ECD_02815: ECD_02815 - Capsule polysaccharide export inner-membrane protein kpsE, at 2,946,767 to 2,947,903 _02815 ECD_02816: ECD_02816 - KpsD protein, at 2,947,927 to 2,949,603 _02816 Position (kb) 2946 2947 2948Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2945.876 kb on + strand, within ECD_02814at 2946.314 kb on - strand, within ECD_02814at 2946.407 kb on + strand, within ECD_02814at 2946.408 kb on - strand, within ECD_02814at 2946.439 kb on + strand, within ECD_02814at 2946.439 kb on + strand, within ECD_02814at 2946.440 kb on - strand, within ECD_02814at 2946.470 kb on + strand, within ECD_02814at 2946.650 kb on + strandat 2946.685 kb on + strandat 2946.686 kb on - strandat 2946.686 kb on - strandat 2946.707 kb on + strandat 2946.708 kb on - strandat 2946.882 kb on - strand, within ECD_02815at 2946.889 kb on + strand, within ECD_02815at 2946.908 kb on + strand, within ECD_02815at 2946.909 kb on - strand, within ECD_02815at 2946.909 kb on - strand, within ECD_02815at 2946.909 kb on - strand, within ECD_02815at 2946.911 kb on - strand, within ECD_02815at 2947.034 kb on + strand, within ECD_02815at 2947.121 kb on - strand, within ECD_02815at 2947.166 kb on + strand, within ECD_02815at 2947.178 kb on - strand, within ECD_02815at 2947.199 kb on - strand, within ECD_02815at 2947.258 kb on + strand, within ECD_02815at 2947.466 kb on - strand, within ECD_02815at 2947.520 kb on + strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.559 kb on - strand, within ECD_02815at 2947.633 kb on - strand, within ECD_02815at 2947.639 kb on + strand, within ECD_02815at 2947.674 kb on + strand, within ECD_02815at 2947.731 kb on + strand, within ECD_02815at 2948.092 kb on - strandat 2948.198 kb on - strand, within ECD_02816at 2948.198 kb on - strand, within ECD_02816at 2948.199 kb on + strand, within ECD_02816at 2948.399 kb on - strand, within ECD_02816at 2948.399 kb on - strand, within ECD_02816at 2948.399 kb on - strand, within ECD_02816at 2948.408 kb on + strand, within ECD_02816at 2948.435 kb on - strand, within ECD_02816at 2948.500 kb on + strand, within ECD_02816at 2948.501 kb on - strand, within ECD_02816at 2948.542 kb on + strand, within ECD_02816at 2948.542 kb on + strand, within ECD_02816at 2948.596 kb on + strand, within ECD_02816at 2948.677 kb on - strand, within ECD_02816at 2948.710 kb on + strand, within ECD_02816at 2948.793 kb on + strand, within ECD_02816at 2948.833 kb on + strand, within ECD_02816at 2948.834 kb on - strand, within ECD_02816at 2948.862 kb on + strand, within ECD_02816at 2948.863 kb on - strand, within ECD_02816at 2948.885 kb on + strand, within ECD_02816

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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2,945,876 + ECD_02814 0.21 -3.4
2,946,314 - ECD_02814 0.64 -2.7
2,946,407 + ECD_02814 0.73 -2.2
2,946,408 - ECD_02814 0.73 -0.4
2,946,439 + ECD_02814 0.76 -2.0
2,946,439 + ECD_02814 0.76 -2.8
2,946,440 - ECD_02814 0.76 -1.0
2,946,470 + ECD_02814 0.79 +2.7
2,946,650 + -3.5
2,946,685 + -1.4
2,946,686 - -1.7
2,946,686 - -3.8
2,946,707 + -0.5
2,946,708 - -0.2
2,946,882 - ECD_02815 0.10 -1.1
2,946,889 + ECD_02815 0.11 -1.2
2,946,908 + ECD_02815 0.12 -1.6
2,946,909 - ECD_02815 0.12 -3.3
2,946,909 - ECD_02815 0.12 -2.2
2,946,909 - ECD_02815 0.12 -1.4
2,946,911 - ECD_02815 0.13 -2.8
2,947,034 + ECD_02815 0.23 -1.6
2,947,121 - ECD_02815 0.31 +0.2
2,947,166 + ECD_02815 0.35 -0.7
2,947,178 - ECD_02815 0.36 -0.6
2,947,199 - ECD_02815 0.38 -2.4
2,947,258 + ECD_02815 0.43 -2.1
2,947,466 - ECD_02815 0.61 -1.5
2,947,520 + ECD_02815 0.66 -2.1
2,947,521 - ECD_02815 0.66 -1.6
2,947,521 - ECD_02815 0.66 -2.6
2,947,521 - ECD_02815 0.66 -1.5
2,947,559 - ECD_02815 0.70 -0.5
2,947,633 - ECD_02815 0.76 -1.1
2,947,639 + ECD_02815 0.77 -1.6
2,947,674 + ECD_02815 0.80 -3.0
2,947,731 + ECD_02815 0.85 -1.7
2,948,092 - -0.5
2,948,198 - ECD_02816 0.16 -1.2
2,948,198 - ECD_02816 0.16 -1.0
2,948,199 + ECD_02816 0.16 -2.8
2,948,399 - ECD_02816 0.28 -2.2
2,948,399 - ECD_02816 0.28 -2.4
2,948,399 - ECD_02816 0.28 -3.6
2,948,408 + ECD_02816 0.29 -1.8
2,948,435 - ECD_02816 0.30 -1.1
2,948,500 + ECD_02816 0.34 -1.5
2,948,501 - ECD_02816 0.34 -2.0
2,948,542 + ECD_02816 0.37 -2.0
2,948,542 + ECD_02816 0.37 -1.4
2,948,596 + ECD_02816 0.40 +0.6
2,948,677 - ECD_02816 0.45 +2.0
2,948,710 + ECD_02816 0.47 -1.2
2,948,793 + ECD_02816 0.52 -1.1
2,948,833 + ECD_02816 0.54 -1.8
2,948,834 - ECD_02816 0.54 -0.7
2,948,862 + ECD_02816 0.56 -4.2
2,948,863 - ECD_02816 0.56 -1.2
2,948,885 + ECD_02816 0.57 -1.2

Or see this region's nucleotide sequence