Strain Fitness in Escherichia coli BL21 around ECD_02812

Experiment: Tailocin 256

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02811 and ECD_02812 are separated by 237 nucleotidesECD_02812 and ECD_04360 are separated by 149 nucleotidesECD_04360 and ECD_02813 are separated by 298 nucleotidesECD_02813 and ECD_02814 are separated by 27 nucleotides ECD_02811: ECD_02811 - hypothetical protein, at 2,943,807 to 2,944,376 _02811 ECD_02812: ECD_02812 - hypothetical protein, at 2,944,614 to 2,944,907 _02812 ECD_04360: ECD_04360 - hypothetical protein, at 2,945,057 to 2,945,182 _04360 ECD_02813: ECD_02813 - hypothetical protein, at 2,945,481 to 2,945,636 _02813 ECD_02814: ECD_02814 - hypothetical protein, at 2,945,664 to 2,946,683 _02814 Position (kb) 2944 2945Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2943.807 kb on - strandat 2943.807 kb on - strandat 2943.807 kb on - strandat 2943.861 kb on - strandat 2943.898 kb on - strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.268 kb on + strand, within ECD_02811at 2944.272 kb on + strand, within ECD_02811at 2944.272 kb on + strand, within ECD_02811at 2944.273 kb on - strand, within ECD_02811at 2944.331 kb on + strandat 2944.339 kb on + strandat 2944.340 kb on - strandat 2944.340 kb on - strandat 2944.517 kb on + strandat 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.657 kb on - strand, within ECD_02812at 2944.657 kb on - strand, within ECD_02812at 2944.679 kb on + strand, within ECD_02812at 2944.679 kb on + strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.772 kb on - strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.899 kb on + strandat 2944.900 kb on - strandat 2944.900 kb on - strandat 2944.954 kb on - strandat 2944.954 kb on - strandat 2945.876 kb on + strand, within ECD_02814

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
remove
2,943,807 - -1.9
2,943,807 - -1.0
2,943,807 - -2.4
2,943,861 - -2.6
2,943,898 - ECD_02811 0.16 -2.1
2,944,219 + ECD_02811 0.72 -1.9
2,944,219 + ECD_02811 0.72 -0.5
2,944,219 + ECD_02811 0.72 -0.7
2,944,220 - ECD_02811 0.72 -1.0
2,944,220 - ECD_02811 0.72 -2.0
2,944,220 - ECD_02811 0.72 -3.0
2,944,220 - ECD_02811 0.72 -2.1
2,944,268 + ECD_02811 0.81 -2.5
2,944,272 + ECD_02811 0.82 +1.5
2,944,272 + ECD_02811 0.82 -4.0
2,944,273 - ECD_02811 0.82 -0.2
2,944,331 + -3.1
2,944,339 + -0.4
2,944,340 - -1.1
2,944,340 - -3.4
2,944,517 + +1.4
2,944,656 + ECD_02812 0.14 -2.7
2,944,656 + ECD_02812 0.14 -1.8
2,944,656 + ECD_02812 0.14 -0.9
2,944,656 + ECD_02812 0.14 -3.8
2,944,656 + ECD_02812 0.14 -1.3
2,944,656 + ECD_02812 0.14 -2.5
2,944,656 + ECD_02812 0.14 -2.9
2,944,657 - ECD_02812 0.15 -2.1
2,944,657 - ECD_02812 0.15 -1.7
2,944,679 + ECD_02812 0.22 -2.7
2,944,679 + ECD_02812 0.22 -2.1
2,944,680 - ECD_02812 0.22 -1.4
2,944,680 - ECD_02812 0.22 -2.5
2,944,772 - ECD_02812 0.54 -2.6
2,944,835 + ECD_02812 0.75 -3.4
2,944,835 + ECD_02812 0.75 -1.6
2,944,836 - ECD_02812 0.76 -1.9
2,944,836 - ECD_02812 0.76 -0.8
2,944,899 + -0.4
2,944,900 - -1.5
2,944,900 - -2.3
2,944,954 - -1.6
2,944,954 - -2.6
2,945,876 + ECD_02814 0.21 -3.4

Or see this region's nucleotide sequence