Strain Fitness in Escherichia coli BL21 around ECD_02444

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02443 and ECD_02444 are separated by 327 nucleotidesECD_02444 and ECD_02445 are separated by 44 nucleotidesECD_02445 and ECD_02446 are separated by 60 nucleotides ECD_02443: ECD_02443 - serine hydroxymethyltransferase, at 2,550,059 to 2,551,312 _02443 ECD_02444: ECD_02444 - fused nitric oxide dioxygenase/dihydropteridine reductase 2, at 2,551,640 to 2,552,830 _02444 ECD_02445: ECD_02445 - regulatory protein P-II for glutamine synthetase, at 2,552,875 to 2,553,213 _02445 ECD_02446: ECD_02446 - response regulator regulating glmY sRNA in two-component system with sensor protein GlrK, at 2,553,274 to 2,554,608 _02446 Position (kb) 2551 2552 2553Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2550.644 kb on - strand, within ECD_02443at 2550.713 kb on - strand, within ECD_02443at 2550.727 kb on - strand, within ECD_02443at 2550.895 kb on - strand, within ECD_02443at 2550.971 kb on - strand, within ECD_02443at 2551.123 kb on - strand, within ECD_02443at 2551.150 kb on - strand, within ECD_02443at 2551.259 kb on - strandat 2551.568 kb on + strandat 2551.725 kb on - strandat 2551.732 kb on + strandat 2551.732 kb on + strandat 2551.820 kb on - strand, within ECD_02444at 2551.922 kb on + strand, within ECD_02444at 2552.009 kb on + strand, within ECD_02444at 2552.016 kb on + strand, within ECD_02444at 2552.016 kb on + strand, within ECD_02444at 2552.016 kb on + strand, within ECD_02444at 2552.028 kb on + strand, within ECD_02444at 2552.028 kb on + strand, within ECD_02444at 2552.033 kb on - strand, within ECD_02444at 2552.054 kb on + strand, within ECD_02444at 2552.293 kb on + strand, within ECD_02444at 2552.326 kb on - strand, within ECD_02444at 2552.763 kb on + strandat 2552.766 kb on + strandat 2552.828 kb on + strandat 2552.947 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.062 kb on + strand, within ECD_02445at 2553.062 kb on + strand, within ECD_02445at 2553.063 kb on - strand, within ECD_02445at 2553.063 kb on - strand, within ECD_02445at 2553.252 kb on - strandat 2553.264 kb on + strandat 2553.265 kb on - strandat 2553.265 kb on - strandat 2553.265 kb on - strandat 2553.404 kb on + strandat 2553.404 kb on + strandat 2553.597 kb on + strand, within ECD_02446at 2553.621 kb on + strand, within ECD_02446at 2553.621 kb on + strand, within ECD_02446at 2553.622 kb on - strand, within ECD_02446at 2553.729 kb on - strand, within ECD_02446

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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2,550,644 - ECD_02443 0.47 -1.2
2,550,713 - ECD_02443 0.52 -1.2
2,550,727 - ECD_02443 0.53 -1.4
2,550,895 - ECD_02443 0.67 -0.3
2,550,971 - ECD_02443 0.73 -2.4
2,551,123 - ECD_02443 0.85 -1.8
2,551,150 - ECD_02443 0.87 -3.1
2,551,259 - -0.5
2,551,568 + -2.3
2,551,725 - -0.3
2,551,732 + +4.0
2,551,732 + -1.4
2,551,820 - ECD_02444 0.15 -1.7
2,551,922 + ECD_02444 0.24 -0.5
2,552,009 + ECD_02444 0.31 -1.8
2,552,016 + ECD_02444 0.32 -1.8
2,552,016 + ECD_02444 0.32 -1.9
2,552,016 + ECD_02444 0.32 -1.1
2,552,028 + ECD_02444 0.33 -0.7
2,552,028 + ECD_02444 0.33 -0.7
2,552,033 - ECD_02444 0.33 -1.0
2,552,054 + ECD_02444 0.35 -0.5
2,552,293 + ECD_02444 0.55 -0.2
2,552,326 - ECD_02444 0.58 -1.0
2,552,763 + -0.7
2,552,766 + -1.2
2,552,828 + +0.1
2,552,947 - ECD_02445 0.21 +1.3
2,553,061 - ECD_02445 0.55 -1.5
2,553,061 - ECD_02445 0.55 +0.6
2,553,061 - ECD_02445 0.55 -0.3
2,553,062 + ECD_02445 0.55 +0.2
2,553,062 + ECD_02445 0.55 -1.0
2,553,063 - ECD_02445 0.55 +0.3
2,553,063 - ECD_02445 0.55 +0.7
2,553,252 - -1.6
2,553,264 + -0.1
2,553,265 - -1.8
2,553,265 - +0.6
2,553,265 - -1.4
2,553,404 + -0.9
2,553,404 + +0.3
2,553,597 + ECD_02446 0.24 +0.1
2,553,621 + ECD_02446 0.26 +1.6
2,553,621 + ECD_02446 0.26 -0.5
2,553,622 - ECD_02446 0.26 +2.4
2,553,729 - ECD_02446 0.34 +0.3

Or see this region's nucleotide sequence