Strain Fitness in Escherichia coli BL21 around ECD_02104

Experiment: Tailocin 256

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02103 and ECD_02104 are separated by 38 nucleotidesECD_02104 and ECD_02105 are separated by 411 nucleotides ECD_02103: ECD_02103 - Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein, at 2,162,678 to 2,163,664 _02103 ECD_02104: ECD_02104 - lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase, at 2,163,703 to 2,164,416 _02104 ECD_02105: ECD_02105 - murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase, at 2,164,828 to 2,165,394 _02105 Position (kb) 2163 2164 2165Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2162.908 kb on + strand, within ECD_02103at 2163.211 kb on - strand, within ECD_02103at 2163.336 kb on + strand, within ECD_02103at 2163.690 kb on - strandat 2163.725 kb on + strandat 2163.769 kb on + strandat 2163.972 kb on + strand, within ECD_02104at 2163.981 kb on + strand, within ECD_02104at 2164.001 kb on + strand, within ECD_02104at 2164.346 kb on + strandat 2164.414 kb on + strandat 2164.693 kb on + strandat 2164.695 kb on + strandat 2164.791 kb on + strandat 2164.855 kb on + strandat 2164.855 kb on + strandat 2164.855 kb on + strandat 2164.857 kb on + strandat 2164.908 kb on + strand, within ECD_02105at 2164.908 kb on + strand, within ECD_02105at 2164.917 kb on + strand, within ECD_02105at 2164.932 kb on + strand, within ECD_02105at 2164.932 kb on + strand, within ECD_02105at 2165.037 kb on + strand, within ECD_02105at 2165.037 kb on + strand, within ECD_02105at 2165.037 kb on + strand, within ECD_02105at 2165.047 kb on + strand, within ECD_02105at 2165.047 kb on + strand, within ECD_02105at 2165.047 kb on + strand, within ECD_02105at 2165.066 kb on + strand, within ECD_02105at 2165.066 kb on + strand, within ECD_02105at 2165.091 kb on + strand, within ECD_02105at 2165.091 kb on + strand, within ECD_02105at 2165.127 kb on + strand, within ECD_02105at 2165.127 kb on + strand, within ECD_02105at 2165.150 kb on + strand, within ECD_02105at 2165.170 kb on + strand, within ECD_02105at 2165.190 kb on + strand, within ECD_02105at 2165.208 kb on + strand, within ECD_02105at 2165.228 kb on + strand, within ECD_02105at 2165.228 kb on + strand, within ECD_02105at 2165.268 kb on + strand, within ECD_02105at 2165.272 kb on + strand, within ECD_02105at 2165.272 kb on + strand, within ECD_02105at 2165.272 kb on + strand, within ECD_02105

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
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2,162,908 + ECD_02103 0.23 +0.2
2,163,211 - ECD_02103 0.54 -0.4
2,163,336 + ECD_02103 0.67 -2.5
2,163,690 - +5.8
2,163,725 + +5.5
2,163,769 + +5.6
2,163,972 + ECD_02104 0.38 +5.4
2,163,981 + ECD_02104 0.39 +5.0
2,164,001 + ECD_02104 0.42 +5.2
2,164,346 + -0.6
2,164,414 + +3.2
2,164,693 + +0.1
2,164,695 + +0.5
2,164,791 + -0.8
2,164,855 + +1.9
2,164,855 + -1.8
2,164,855 + -2.4
2,164,857 + +0.4
2,164,908 + ECD_02105 0.14 +1.8
2,164,908 + ECD_02105 0.14 +0.1
2,164,917 + ECD_02105 0.16 +2.5
2,164,932 + ECD_02105 0.18 +0.7
2,164,932 + ECD_02105 0.18 +0.8
2,165,037 + ECD_02105 0.37 +0.5
2,165,037 + ECD_02105 0.37 +0.3
2,165,037 + ECD_02105 0.37 -0.6
2,165,047 + ECD_02105 0.39 -0.5
2,165,047 + ECD_02105 0.39 +1.7
2,165,047 + ECD_02105 0.39 -0.3
2,165,066 + ECD_02105 0.42 +1.3
2,165,066 + ECD_02105 0.42 +0.3
2,165,091 + ECD_02105 0.46 +0.2
2,165,091 + ECD_02105 0.46 +0.1
2,165,127 + ECD_02105 0.53 +0.6
2,165,127 + ECD_02105 0.53 +0.1
2,165,150 + ECD_02105 0.57 +0.3
2,165,170 + ECD_02105 0.60 -0.4
2,165,190 + ECD_02105 0.64 +0.1
2,165,208 + ECD_02105 0.67 +0.6
2,165,228 + ECD_02105 0.71 -0.6
2,165,228 + ECD_02105 0.71 +0.7
2,165,268 + ECD_02105 0.78 -0.4
2,165,272 + ECD_02105 0.78 -0.1
2,165,272 + ECD_02105 0.78 +0.3
2,165,272 + ECD_02105 0.78 -0.3

Or see this region's nucleotide sequence