Experiment: Tailocin 256
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01357 and ECD_01358 are separated by 58 nucleotides ECD_01358 and ECD_01359 are separated by 290 nucleotides ECD_01359 and ECD_01360 overlap by 4 nucleotides
ECD_01357: ECD_01357 - phenylacetaldehyde dehydrogenase, at 1,423,078 to 1,424,577
_01357
ECD_01358: ECD_01358 - tyramine oxidase, copper-requiring, at 1,424,636 to 1,426,354
_01358
ECD_01359: ECD_01359 - putative transposase-related protein, at 1,426,645 to 1,426,953
_01359
ECD_01360: ECD_01360 - IS3 element protein InsF, at 1,426,950 to 1,427,816
_01360
Position (kb)
1424
1425
1426
1427 Strain fitness (log2 ratio)
-1
0
1
2 at 1424.227 kb on + strand, within ECD_01357 at 1424.228 kb on - strand, within ECD_01357 at 1424.553 kb on + strand at 1424.821 kb on - strand, within ECD_01358 at 1425.241 kb on + strand, within ECD_01358 at 1425.241 kb on + strand, within ECD_01358 at 1425.424 kb on - strand, within ECD_01358 at 1425.424 kb on - strand, within ECD_01358 at 1425.506 kb on - strand, within ECD_01358 at 1425.506 kb on - strand, within ECD_01358 at 1425.655 kb on + strand, within ECD_01358 at 1425.781 kb on - strand, within ECD_01358 at 1425.911 kb on - strand, within ECD_01358 at 1426.157 kb on - strand, within ECD_01358
Per-strain Table
Position Strand Gene LocusTag Fraction Tailocin 256 remove 1,424,227 + ECD_01357 0.77 +0.6 1,424,228 - ECD_01357 0.77 -0.2 1,424,553 + +0.4 1,424,821 - ECD_01358 0.11 -0.6 1,425,241 + ECD_01358 0.35 -0.7 1,425,241 + ECD_01358 0.35 +1.4 1,425,424 - ECD_01358 0.46 +0.5 1,425,424 - ECD_01358 0.46 -0.9 1,425,506 - ECD_01358 0.51 -0.8 1,425,506 - ECD_01358 0.51 +1.7 1,425,655 + ECD_01358 0.59 +0.4 1,425,781 - ECD_01358 0.67 +0.1 1,425,911 - ECD_01358 0.74 +2.0 1,426,157 - ECD_01358 0.88 -1.0
Or see this region's nucleotide sequence