Strain Fitness in Escherichia coli BL21 around ECD_00247

Experiment: Tailocin 256

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00246 and ECD_00247 are separated by 246 nucleotidesECD_00247 and ECD_00248 are separated by 312 nucleotides ECD_00246: ECD_00246 - DUF1440 family inner membrane acid resistance protein, at 273,177 to 273,791 _00246 ECD_00247: ECD_00247 - UPF0153 cysteine cluster protein, at 274,038 to 274,367 _00247 ECD_00248: ECD_00248 - ECP production pilus chaperone, at 274,680 to 275,390 _00248 ECD_00249: ECD_00249 - polymerized tip adhesin of ECP fibers, at 275,359 to 277,002 _00249 Position (kb) 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 273.056 kb on + strandat 273.057 kb on - strandat 273.148 kb on + strandat 273.161 kb on + strandat 273.176 kb on + strandat 273.450 kb on + strand, within ECD_00246at 273.452 kb on + strand, within ECD_00246at 273.473 kb on + strand, within ECD_00246at 273.694 kb on + strand, within ECD_00246at 273.746 kb on + strandat 273.883 kb on + strandat 273.953 kb on + strandat 274.006 kb on + strandat 274.028 kb on + strandat 274.029 kb on - strandat 274.033 kb on + strandat 274.041 kb on + strandat 274.148 kb on - strand, within ECD_00247at 274.149 kb on + strand, within ECD_00247at 274.246 kb on - strand, within ECD_00247at 274.272 kb on - strand, within ECD_00247at 274.378 kb on + strandat 274.379 kb on - strandat 274.379 kb on - strandat 274.409 kb on - strandat 274.415 kb on + strandat 274.415 kb on + strandat 274.415 kb on + strandat 274.416 kb on - strandat 274.419 kb on + strandat 274.419 kb on + strandat 274.420 kb on - strandat 274.420 kb on - strandat 274.428 kb on - strandat 274.493 kb on + strandat 274.497 kb on + strandat 274.500 kb on + strandat 274.501 kb on - strandat 274.511 kb on + strandat 274.512 kb on - strandat 274.523 kb on + strandat 274.523 kb on + strandat 274.524 kb on - strandat 274.739 kb on + strandat 274.771 kb on - strand, within ECD_00248at 274.804 kb on - strand, within ECD_00248at 274.807 kb on + strand, within ECD_00248at 274.851 kb on - strand, within ECD_00248at 274.858 kb on - strand, within ECD_00248at 274.862 kb on + strand, within ECD_00248at 274.863 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.887 kb on + strand, within ECD_00248at 274.887 kb on + strand, within ECD_00248at 274.888 kb on - strand, within ECD_00248at 274.920 kb on - strand, within ECD_00248at 274.942 kb on - strand, within ECD_00248at 274.945 kb on - strand, within ECD_00248at 275.087 kb on - strand, within ECD_00248at 275.098 kb on + strand, within ECD_00248at 275.193 kb on - strand, within ECD_00248at 275.198 kb on + strand, within ECD_00248at 275.218 kb on + strand, within ECD_00248at 275.360 kb on + strandat 275.360 kb on + strandat 275.361 kb on - strandat 275.364 kb on + strandat 275.365 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 256
remove
273,056 + -1.1
273,057 - -0.3
273,148 + +1.0
273,161 + +1.3
273,176 + -0.2
273,450 + ECD_00246 0.44 +1.2
273,452 + ECD_00246 0.45 +2.0
273,473 + ECD_00246 0.48 -0.6
273,694 + ECD_00246 0.84 -2.2
273,746 + -2.3
273,883 + -2.6
273,953 + +0.2
274,006 + -1.6
274,028 + -0.4
274,029 - +0.1
274,033 + +0.4
274,041 + +2.3
274,148 - ECD_00247 0.33 -2.8
274,149 + ECD_00247 0.34 -0.9
274,246 - ECD_00247 0.63 +2.3
274,272 - ECD_00247 0.71 -0.3
274,378 + -0.3
274,379 - +1.2
274,379 - +1.4
274,409 - -0.8
274,415 + -0.7
274,415 + +0.3
274,415 + +0.3
274,416 - -1.5
274,419 + +0.8
274,419 + -1.2
274,420 - +0.4
274,420 - -2.9
274,428 - -0.1
274,493 + -0.4
274,497 + -1.2
274,500 + -0.1
274,501 - -2.1
274,511 + -0.5
274,512 - +1.4
274,523 + -2.0
274,523 + +2.0
274,524 - +1.5
274,739 + -0.3
274,771 - ECD_00248 0.13 -0.5
274,804 - ECD_00248 0.17 +1.0
274,807 + ECD_00248 0.18 +1.6
274,851 - ECD_00248 0.24 +0.2
274,858 - ECD_00248 0.25 -2.3
274,862 + ECD_00248 0.26 -0.6
274,863 - ECD_00248 0.26 +0.5
274,884 - ECD_00248 0.29 -0.2
274,884 - ECD_00248 0.29 -0.8
274,884 - ECD_00248 0.29 -0.7
274,884 - ECD_00248 0.29 -1.2
274,887 + ECD_00248 0.29 -0.7
274,887 + ECD_00248 0.29 -0.5
274,888 - ECD_00248 0.29 +0.4
274,920 - ECD_00248 0.34 +0.2
274,942 - ECD_00248 0.37 +0.7
274,945 - ECD_00248 0.37 +1.9
275,087 - ECD_00248 0.57 -1.3
275,098 + ECD_00248 0.59 -0.1
275,193 - ECD_00248 0.72 +0.0
275,198 + ECD_00248 0.73 -0.0
275,218 + ECD_00248 0.76 +0.7
275,360 + +2.1
275,360 + -1.9
275,361 - +1.5
275,364 + +0.0
275,365 - +0.6

Or see this region's nucleotide sequence