Experiment: Tailocin 256
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00091 and ECD_00092 are separated by 53 nucleotides ECD_00092 and ECD_00093 overlap by 8 nucleotides ECD_00093 and ECD_00094 are separated by 1 nucleotides
ECD_00091: ECD_00091 - N-acetylglucosaminyl transferase, at 102,449 to 103,516
_00091
ECD_00092: ECD_00092 - UDP-N-acetylmuramate:L-alanine ligase, at 103,570 to 105,045
_00092
ECD_00093: ECD_00093 - D-alanine:D-alanine ligase, at 105,038 to 105,958
_00093
ECD_00094: ECD_00094 - divisome assembly protein, membrane anchored protein involved in growth of wall at septum, at 105,960 to 106,790
_00094
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 103.556 kb on + strand at 103.556 kb on + strand at 105.284 kb on + strand, within ECD_00093 at 105.330 kb on + strand, within ECD_00093 at 105.643 kb on + strand, within ECD_00093 at 105.643 kb on + strand, within ECD_00093 at 105.704 kb on + strand, within ECD_00093 at 105.802 kb on + strand, within ECD_00093 at 105.802 kb on + strand, within ECD_00093 at 105.811 kb on + strand, within ECD_00093 at 105.811 kb on + strand, within ECD_00093 at 105.811 kb on + strand, within ECD_00093 at 105.853 kb on + strand, within ECD_00093 at 105.910 kb on + strand at 105.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tailocin 256 remove 103,556 + +4.3 103,556 + +0.6 105,284 + ECD_00093 0.27 +1.0 105,330 + ECD_00093 0.32 +0.3 105,643 + ECD_00093 0.66 +0.0 105,643 + ECD_00093 0.66 +0.2 105,704 + ECD_00093 0.72 -0.9 105,802 + ECD_00093 0.83 +0.1 105,802 + ECD_00093 0.83 +0.2 105,811 + ECD_00093 0.84 +0.5 105,811 + ECD_00093 0.84 +0.1 105,811 + ECD_00093 0.84 +0.4 105,853 + ECD_00093 0.88 -2.0 105,910 + -1.3 105,930 + -0.8
Or see this region's nucleotide sequence