Strain Fitness in Escherichia coli BL21 around ECD_03988

Experiment: Tailocin 255

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03987 and ECD_03988 are separated by 324 nucleotidesECD_03988 and ECD_03989 are separated by 195 nucleotides ECD_03987: ECD_03987 - adi system transcriptional activator, at 4,244,247 to 4,245,008 _03987 ECD_03988: ECD_03988 - arginine decarboxylase, at 4,245,333 to 4,247,603 _03988 ECD_03989: ECD_03989 - melibiose operon transcriptional regulator; autoregulator, at 4,247,799 to 4,248,707 _03989 Position (kb) 4245 4246 4247 4248Strain fitness (log2 ratio) -1 0 1 2at 4244.336 kb on + strand, within ECD_03987at 4244.494 kb on - strand, within ECD_03987at 4244.577 kb on - strand, within ECD_03987at 4244.859 kb on - strand, within ECD_03987at 4245.008 kb on + strandat 4245.009 kb on - strandat 4245.358 kb on + strandat 4245.439 kb on - strandat 4245.442 kb on + strandat 4245.442 kb on + strandat 4245.447 kb on + strandat 4245.448 kb on - strandat 4245.596 kb on - strand, within ECD_03988at 4245.737 kb on - strand, within ECD_03988at 4245.787 kb on + strand, within ECD_03988at 4245.866 kb on + strand, within ECD_03988at 4245.866 kb on + strand, within ECD_03988at 4245.867 kb on - strand, within ECD_03988at 4245.894 kb on + strand, within ECD_03988at 4245.894 kb on + strand, within ECD_03988at 4245.895 kb on - strand, within ECD_03988at 4245.895 kb on - strand, within ECD_03988at 4245.895 kb on - strand, within ECD_03988at 4246.013 kb on + strand, within ECD_03988at 4246.014 kb on - strand, within ECD_03988at 4246.031 kb on + strand, within ECD_03988at 4246.206 kb on - strand, within ECD_03988at 4246.207 kb on + strand, within ECD_03988at 4246.207 kb on + strand, within ECD_03988at 4246.208 kb on - strand, within ECD_03988at 4246.327 kb on + strand, within ECD_03988at 4246.357 kb on + strand, within ECD_03988at 4246.358 kb on - strand, within ECD_03988at 4246.358 kb on - strand, within ECD_03988at 4246.405 kb on - strand, within ECD_03988at 4246.405 kb on - strand, within ECD_03988at 4246.405 kb on - strand, within ECD_03988at 4246.412 kb on + strand, within ECD_03988at 4246.412 kb on + strand, within ECD_03988at 4246.412 kb on + strand, within ECD_03988at 4246.412 kb on + strand, within ECD_03988at 4246.412 kb on + strand, within ECD_03988at 4246.412 kb on + strand, within ECD_03988at 4246.413 kb on - strand, within ECD_03988at 4246.413 kb on - strand, within ECD_03988at 4246.413 kb on - strand, within ECD_03988at 4246.413 kb on - strand, within ECD_03988at 4246.413 kb on - strand, within ECD_03988at 4246.413 kb on - strand, within ECD_03988at 4246.414 kb on + strand, within ECD_03988at 4246.414 kb on + strand, within ECD_03988at 4246.414 kb on + strand, within ECD_03988at 4246.415 kb on - strand, within ECD_03988at 4246.415 kb on - strand, within ECD_03988at 4246.415 kb on - strand, within ECD_03988at 4246.415 kb on - strand, within ECD_03988at 4246.472 kb on + strand, within ECD_03988at 4246.510 kb on + strand, within ECD_03988at 4246.510 kb on + strand, within ECD_03988at 4246.543 kb on + strand, within ECD_03988at 4246.544 kb on - strand, within ECD_03988at 4246.616 kb on + strand, within ECD_03988at 4246.618 kb on + strand, within ECD_03988at 4246.618 kb on + strand, within ECD_03988at 4246.619 kb on - strand, within ECD_03988at 4246.634 kb on - strand, within ECD_03988at 4246.787 kb on + strand, within ECD_03988at 4246.788 kb on - strand, within ECD_03988at 4246.789 kb on + strand, within ECD_03988at 4246.789 kb on + strand, within ECD_03988at 4246.790 kb on - strand, within ECD_03988at 4246.790 kb on - strand, within ECD_03988at 4246.844 kb on + strand, within ECD_03988at 4246.844 kb on + strand, within ECD_03988at 4246.844 kb on + strand, within ECD_03988at 4246.914 kb on - strand, within ECD_03988at 4246.914 kb on - strand, within ECD_03988at 4246.951 kb on - strand, within ECD_03988at 4247.059 kb on + strand, within ECD_03988at 4247.059 kb on + strand, within ECD_03988at 4247.060 kb on - strand, within ECD_03988at 4247.060 kb on - strand, within ECD_03988at 4247.060 kb on - strand, within ECD_03988at 4247.060 kb on - strand, within ECD_03988at 4247.062 kb on + strand, within ECD_03988at 4247.062 kb on + strand, within ECD_03988at 4247.062 kb on + strand, within ECD_03988at 4247.062 kb on + strand, within ECD_03988at 4247.063 kb on - strand, within ECD_03988at 4247.063 kb on - strand, within ECD_03988at 4247.063 kb on - strand, within ECD_03988at 4247.063 kb on - strand, within ECD_03988at 4247.072 kb on - strand, within ECD_03988at 4247.072 kb on - strand, within ECD_03988at 4247.137 kb on + strand, within ECD_03988at 4247.155 kb on + strand, within ECD_03988at 4247.156 kb on - strand, within ECD_03988at 4247.156 kb on - strand, within ECD_03988at 4247.518 kb on - strandat 4247.589 kb on + strandat 4247.643 kb on + strandat 4247.644 kb on - strandat 4247.866 kb on + strandat 4247.866 kb on + strandat 4247.866 kb on + strandat 4247.895 kb on - strand, within ECD_03989at 4247.956 kb on - strand, within ECD_03989at 4247.993 kb on - strand, within ECD_03989at 4247.993 kb on - strand, within ECD_03989at 4248.027 kb on + strand, within ECD_03989at 4248.040 kb on + strand, within ECD_03989at 4248.041 kb on - strand, within ECD_03989at 4248.041 kb on - strand, within ECD_03989at 4248.051 kb on - strand, within ECD_03989at 4248.097 kb on + strand, within ECD_03989at 4248.098 kb on - strand, within ECD_03989at 4248.134 kb on - strand, within ECD_03989at 4248.182 kb on + strand, within ECD_03989at 4248.283 kb on - strand, within ECD_03989at 4248.283 kb on - strand, within ECD_03989at 4248.599 kb on + strand, within ECD_03989

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 255
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4,244,336 + ECD_03987 0.12 -0.1
4,244,494 - ECD_03987 0.32 +0.3
4,244,577 - ECD_03987 0.43 +0.0
4,244,859 - ECD_03987 0.80 -0.3
4,245,008 + -0.2
4,245,009 - +0.2
4,245,358 + -0.1
4,245,439 - +0.3
4,245,442 + +0.4
4,245,442 + +0.4
4,245,447 + -0.5
4,245,448 - -0.0
4,245,596 - ECD_03988 0.12 +0.6
4,245,737 - ECD_03988 0.18 +0.3
4,245,787 + ECD_03988 0.20 +0.6
4,245,866 + ECD_03988 0.23 -0.3
4,245,866 + ECD_03988 0.23 +0.1
4,245,867 - ECD_03988 0.24 +1.0
4,245,894 + ECD_03988 0.25 -0.2
4,245,894 + ECD_03988 0.25 -0.6
4,245,895 - ECD_03988 0.25 -0.6
4,245,895 - ECD_03988 0.25 +0.4
4,245,895 - ECD_03988 0.25 -0.3
4,246,013 + ECD_03988 0.30 -0.4
4,246,014 - ECD_03988 0.30 +0.5
4,246,031 + ECD_03988 0.31 +0.2
4,246,206 - ECD_03988 0.38 -0.7
4,246,207 + ECD_03988 0.38 +0.3
4,246,207 + ECD_03988 0.38 +0.1
4,246,208 - ECD_03988 0.39 +0.0
4,246,327 + ECD_03988 0.44 +0.5
4,246,357 + ECD_03988 0.45 +0.1
4,246,358 - ECD_03988 0.45 -0.5
4,246,358 - ECD_03988 0.45 +0.3
4,246,405 - ECD_03988 0.47 +0.0
4,246,405 - ECD_03988 0.47 +0.8
4,246,405 - ECD_03988 0.47 +0.5
4,246,412 + ECD_03988 0.48 -0.2
4,246,412 + ECD_03988 0.48 -0.5
4,246,412 + ECD_03988 0.48 +0.4
4,246,412 + ECD_03988 0.48 +0.5
4,246,412 + ECD_03988 0.48 -0.6
4,246,412 + ECD_03988 0.48 -0.9
4,246,413 - ECD_03988 0.48 +0.1
4,246,413 - ECD_03988 0.48 +1.1
4,246,413 - ECD_03988 0.48 +0.7
4,246,413 - ECD_03988 0.48 -0.1
4,246,413 - ECD_03988 0.48 +0.0
4,246,413 - ECD_03988 0.48 +0.1
4,246,414 + ECD_03988 0.48 +0.4
4,246,414 + ECD_03988 0.48 +1.1
4,246,414 + ECD_03988 0.48 +0.6
4,246,415 - ECD_03988 0.48 -0.5
4,246,415 - ECD_03988 0.48 +0.5
4,246,415 - ECD_03988 0.48 +0.3
4,246,415 - ECD_03988 0.48 +0.2
4,246,472 + ECD_03988 0.50 +1.6
4,246,510 + ECD_03988 0.52 -0.1
4,246,510 + ECD_03988 0.52 +0.8
4,246,543 + ECD_03988 0.53 +0.7
4,246,544 - ECD_03988 0.53 +1.9
4,246,616 + ECD_03988 0.56 -0.1
4,246,618 + ECD_03988 0.57 +0.4
4,246,618 + ECD_03988 0.57 +0.7
4,246,619 - ECD_03988 0.57 +1.1
4,246,634 - ECD_03988 0.57 +0.0
4,246,787 + ECD_03988 0.64 -0.1
4,246,788 - ECD_03988 0.64 +1.7
4,246,789 + ECD_03988 0.64 +1.7
4,246,789 + ECD_03988 0.64 -0.4
4,246,790 - ECD_03988 0.64 +0.6
4,246,790 - ECD_03988 0.64 -0.1
4,246,844 + ECD_03988 0.67 -0.2
4,246,844 + ECD_03988 0.67 +0.6
4,246,844 + ECD_03988 0.67 -0.1
4,246,914 - ECD_03988 0.70 +0.2
4,246,914 - ECD_03988 0.70 -0.0
4,246,951 - ECD_03988 0.71 -0.2
4,247,059 + ECD_03988 0.76 -0.5
4,247,059 + ECD_03988 0.76 -0.7
4,247,060 - ECD_03988 0.76 +1.0
4,247,060 - ECD_03988 0.76 +0.4
4,247,060 - ECD_03988 0.76 -0.2
4,247,060 - ECD_03988 0.76 -0.3
4,247,062 + ECD_03988 0.76 -0.1
4,247,062 + ECD_03988 0.76 +0.5
4,247,062 + ECD_03988 0.76 +0.3
4,247,062 + ECD_03988 0.76 +0.7
4,247,063 - ECD_03988 0.76 -0.2
4,247,063 - ECD_03988 0.76 -0.2
4,247,063 - ECD_03988 0.76 +1.1
4,247,063 - ECD_03988 0.76 -0.2
4,247,072 - ECD_03988 0.77 +0.7
4,247,072 - ECD_03988 0.77 +0.1
4,247,137 + ECD_03988 0.79 -0.4
4,247,155 + ECD_03988 0.80 -0.1
4,247,156 - ECD_03988 0.80 +0.8
4,247,156 - ECD_03988 0.80 -0.7
4,247,518 - +0.5
4,247,589 + -0.6
4,247,643 + +1.0
4,247,644 - -0.0
4,247,866 + -0.6
4,247,866 + +0.3
4,247,866 + +0.4
4,247,895 - ECD_03989 0.11 +0.8
4,247,956 - ECD_03989 0.17 +0.2
4,247,993 - ECD_03989 0.21 +0.0
4,247,993 - ECD_03989 0.21 -0.3
4,248,027 + ECD_03989 0.25 -0.5
4,248,040 + ECD_03989 0.27 +0.7
4,248,041 - ECD_03989 0.27 -0.2
4,248,041 - ECD_03989 0.27 +0.4
4,248,051 - ECD_03989 0.28 +0.3
4,248,097 + ECD_03989 0.33 +0.7
4,248,098 - ECD_03989 0.33 +1.3
4,248,134 - ECD_03989 0.37 +0.6
4,248,182 + ECD_03989 0.42 +0.9
4,248,283 - ECD_03989 0.53 +0.4
4,248,283 - ECD_03989 0.53 +0.4
4,248,599 + ECD_03989 0.88 -0.0

Or see this region's nucleotide sequence