Strain Fitness in Escherichia coli BL21 around ECD_00134

Experiment: Tailocin 255

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00132 and ECD_00133 are separated by 11 nucleotidesECD_00133 and ECD_00134 are separated by 112 nucleotidesECD_00134 and ECD_00135 overlap by 20 nucleotidesECD_00135 and ECD_00136 are separated by 26 nucleotides ECD_00132: ECD_00132 - pantothenate synthetase, at 150,748 to 151,599 _00132 ECD_00133: ECD_00133 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 151,611 to 152,405 _00133 ECD_00134: ECD_00134 - putative fimbrial-like adhesin protein, at 152,518 to 153,864 _00134 ECD_00135: ECD_00135 - putative fimbrial-like adhesin protein, at 153,845 to 154,441 _00135 ECD_00136: ECD_00136 - putative fimbrial-like adhesin protein, at 154,468 to 155,070 _00136 Position (kb) 152 153 154Strain fitness (log2 ratio) -1 0 1at 151.594 kb on + strandat 151.664 kb on + strandat 151.666 kb on + strandat 151.666 kb on + strandat 151.666 kb on + strandat 151.667 kb on - strandat 151.667 kb on - strandat 151.667 kb on - strandat 151.724 kb on + strand, within ECD_00133at 151.835 kb on + strand, within ECD_00133at 151.897 kb on - strand, within ECD_00133at 151.902 kb on + strand, within ECD_00133at 151.903 kb on - strand, within ECD_00133at 151.951 kb on - strand, within ECD_00133at 151.958 kb on - strand, within ECD_00133at 151.996 kb on - strand, within ECD_00133at 151.996 kb on - strand, within ECD_00133at 152.047 kb on - strand, within ECD_00133at 152.138 kb on - strand, within ECD_00133at 152.190 kb on + strand, within ECD_00133at 152.191 kb on - strand, within ECD_00133at 152.191 kb on - strand, within ECD_00133at 152.191 kb on - strand, within ECD_00133at 152.292 kb on - strand, within ECD_00133at 152.325 kb on - strand, within ECD_00133at 152.361 kb on - strandat 152.369 kb on + strandat 152.445 kb on + strandat 152.475 kb on - strandat 152.481 kb on + strandat 152.516 kb on + strandat 152.516 kb on + strandat 152.517 kb on - strandat 152.569 kb on + strandat 152.570 kb on - strandat 152.577 kb on + strandat 152.594 kb on - strandat 152.619 kb on - strandat 152.619 kb on - strandat 152.623 kb on + strandat 152.623 kb on + strandat 152.624 kb on - strandat 152.625 kb on + strandat 152.625 kb on + strandat 152.625 kb on + strandat 152.625 kb on + strandat 152.626 kb on - strandat 152.626 kb on - strandat 152.764 kb on + strand, within ECD_00134at 152.790 kb on + strand, within ECD_00134at 152.791 kb on - strand, within ECD_00134at 152.806 kb on - strand, within ECD_00134at 152.941 kb on - strand, within ECD_00134at 153.710 kb on - strand, within ECD_00134at 154.442 kb on - strandat 154.443 kb on + strandat 154.470 kb on - strandat 154.574 kb on + strand, within ECD_00136at 154.636 kb on - strand, within ECD_00136

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Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 255
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151,594 + +0.2
151,664 + -0.5
151,666 + -0.2
151,666 + -0.1
151,666 + -0.3
151,667 - +0.5
151,667 - +0.5
151,667 - -0.7
151,724 + ECD_00133 0.14 -0.0
151,835 + ECD_00133 0.28 -0.0
151,897 - ECD_00133 0.36 +0.8
151,902 + ECD_00133 0.37 -0.5
151,903 - ECD_00133 0.37 -0.6
151,951 - ECD_00133 0.43 +0.2
151,958 - ECD_00133 0.44 -0.7
151,996 - ECD_00133 0.48 -0.4
151,996 - ECD_00133 0.48 -0.3
152,047 - ECD_00133 0.55 -0.5
152,138 - ECD_00133 0.66 -0.0
152,190 + ECD_00133 0.73 +0.1
152,191 - ECD_00133 0.73 +0.2
152,191 - ECD_00133 0.73 +0.5
152,191 - ECD_00133 0.73 +0.2
152,292 - ECD_00133 0.86 -0.1
152,325 - ECD_00133 0.90 +1.0
152,361 - +0.3
152,369 + -0.1
152,445 + -0.2
152,475 - +0.7
152,481 + -0.9
152,516 + -0.1
152,516 + +0.3
152,517 - +0.1
152,569 + +0.1
152,570 - -1.2
152,577 + +0.3
152,594 - +0.6
152,619 - -0.1
152,619 - -0.1
152,623 + -0.0
152,623 + +0.4
152,624 - +0.1
152,625 + -0.5
152,625 + -0.0
152,625 + +0.6
152,625 + +0.7
152,626 - +0.4
152,626 - -0.6
152,764 + ECD_00134 0.18 -0.4
152,790 + ECD_00134 0.20 -0.9
152,791 - ECD_00134 0.20 +0.3
152,806 - ECD_00134 0.21 -0.5
152,941 - ECD_00134 0.31 -1.5
153,710 - ECD_00134 0.88 -1.0
154,442 - -1.7
154,443 + -0.1
154,470 - +0.6
154,574 + ECD_00136 0.18 -0.7
154,636 - ECD_00136 0.28 -0.8

Or see this region's nucleotide sequence