Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3772 and Atu3773 are separated by 2 nucleotides Atu3773 and Atu3774 are separated by 73 nucleotides
Atu3772: Atu3772 - hypothetical protein, at 855,841 to 856,890
Atu3772
Atu3773: Atu3773 - hypothetical protein, at 856,893 to 857,357
Atu3773
Atu3774: Atu3774 - capsule expression protein, at 857,431 to 858,426
Atu3774
Position (kb) 856
857
858 Strain fitness (log2 ratio) -1
0
1
2
3 at 855.915 kb on + strand at 855.923 kb on - strand at 855.923 kb on - strand at 855.933 kb on + strand at 855.949 kb on + strand, within Atu3772 at 856.040 kb on + strand, within Atu3772 at 856.285 kb on + strand, within Atu3772 at 856.359 kb on - strand, within Atu3772 at 856.391 kb on - strand, within Atu3772 at 856.513 kb on - strand, within Atu3772 at 856.565 kb on + strand, within Atu3772 at 856.608 kb on - strand, within Atu3772 at 856.614 kb on - strand, within Atu3772 at 856.700 kb on + strand, within Atu3772 at 856.772 kb on - strand, within Atu3772 at 856.779 kb on - strand, within Atu3772 at 856.790 kb on + strand at 856.834 kb on - strand at 856.923 kb on + strand at 856.931 kb on - strand at 856.968 kb on - strand, within Atu3773 at 857.245 kb on + strand, within Atu3773 at 857.257 kb on - strand, within Atu3773 at 857.288 kb on - strand, within Atu3773 at 857.366 kb on - strand at 857.366 kb on - strand at 857.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 855,915 + +0.4 855,923 - +0.1 855,923 - +0.9 855,933 + +0.2 855,949 + Atu3772 0.10 +0.9 856,040 + Atu3772 0.19 -0.1 856,285 + Atu3772 0.42 -0.1 856,359 - Atu3772 0.49 -0.1 856,391 - Atu3772 0.52 +1.1 856,513 - Atu3772 0.64 +0.8 856,565 + Atu3772 0.69 -0.2 856,608 - Atu3772 0.73 +0.0 856,614 - Atu3772 0.74 -0.1 856,700 + Atu3772 0.82 +3.4 856,772 - Atu3772 0.89 +0.1 856,779 - Atu3772 0.89 -0.3 856,790 + -0.4 856,834 - +0.0 856,923 + -0.0 856,931 - +0.2 856,968 - Atu3773 0.16 -1.2 857,245 + Atu3773 0.76 +0.2 857,257 - Atu3773 0.78 +0.2 857,288 - Atu3773 0.85 +1.4 857,366 - +0.1 857,366 - -0.1 857,428 + +0.7
Or see this region's nucleotide sequence