Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3094 and Atu3095 are separated by 236 nucleotides Atu3095 and Atu3096 are separated by 260 nucleotides
Atu3094: Atu3094 - methyl-accepting chemotaxis protein, at 100,201 to 101,985
Atu3094
Atu3095: Atu3095 - hypothetical protein, at 102,222 to 102,695
Atu3095
Atu3096: Atu3096 - sn-glycerol 3-phosphate ABC transporter substrate-binding protein, at 102,956 to 104,299
Atu3096
Position (kb) 102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.231 kb on + strand, within Atu3094 at 101.279 kb on + strand, within Atu3094 at 101.281 kb on + strand, within Atu3094 at 101.287 kb on - strand, within Atu3094 at 101.289 kb on - strand, within Atu3094 at 101.313 kb on + strand, within Atu3094 at 101.321 kb on - strand, within Atu3094 at 101.329 kb on + strand, within Atu3094 at 101.337 kb on - strand, within Atu3094 at 101.390 kb on - strand, within Atu3094 at 101.427 kb on + strand, within Atu3094 at 101.427 kb on + strand, within Atu3094 at 101.432 kb on + strand, within Atu3094 at 101.440 kb on - strand, within Atu3094 at 101.470 kb on - strand, within Atu3094 at 101.480 kb on - strand, within Atu3094 at 101.480 kb on - strand, within Atu3094 at 101.576 kb on + strand, within Atu3094 at 101.675 kb on + strand, within Atu3094 at 101.675 kb on + strand, within Atu3094 at 101.695 kb on - strand, within Atu3094 at 101.700 kb on - strand, within Atu3094 at 101.847 kb on + strand at 101.847 kb on + strand at 101.855 kb on - strand at 101.920 kb on + strand at 102.097 kb on - strand at 102.251 kb on + strand at 102.405 kb on + strand, within Atu3095 at 102.550 kb on + strand, within Atu3095 at 102.554 kb on - strand, within Atu3095 at 102.600 kb on + strand, within Atu3095 at 102.884 kb on + strand at 102.990 kb on + strand at 103.064 kb on - strand at 103.146 kb on - strand, within Atu3096 at 103.147 kb on - strand, within Atu3096 at 103.174 kb on + strand, within Atu3096 at 103.256 kb on - strand, within Atu3096 at 103.258 kb on + strand, within Atu3096 at 103.258 kb on + strand, within Atu3096 at 103.258 kb on + strand, within Atu3096 at 103.266 kb on + strand, within Atu3096 at 103.266 kb on - strand, within Atu3096 at 103.266 kb on - strand, within Atu3096 at 103.360 kb on - strand, within Atu3096 at 103.365 kb on - strand, within Atu3096 at 103.472 kb on + strand, within Atu3096 at 103.566 kb on - strand, within Atu3096 at 103.566 kb on - strand, within Atu3096 at 103.566 kb on - strand, within Atu3096 at 103.566 kb on - strand, within Atu3096 at 103.594 kb on + strand, within Atu3096 at 103.594 kb on + strand, within Atu3096 at 103.639 kb on + strand, within Atu3096
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 101,231 + Atu3094 0.58 +0.1 101,279 + Atu3094 0.60 +0.9 101,281 + Atu3094 0.61 -1.0 101,287 - Atu3094 0.61 +0.0 101,289 - Atu3094 0.61 -0.9 101,313 + Atu3094 0.62 -0.1 101,321 - Atu3094 0.63 +1.4 101,329 + Atu3094 0.63 -0.3 101,337 - Atu3094 0.64 +0.7 101,390 - Atu3094 0.67 -0.2 101,427 + Atu3094 0.69 -0.6 101,427 + Atu3094 0.69 +0.7 101,432 + Atu3094 0.69 +0.3 101,440 - Atu3094 0.69 -0.6 101,470 - Atu3094 0.71 -0.9 101,480 - Atu3094 0.72 +0.0 101,480 - Atu3094 0.72 -0.1 101,576 + Atu3094 0.77 +0.2 101,675 + Atu3094 0.83 +2.0 101,675 + Atu3094 0.83 +0.2 101,695 - Atu3094 0.84 +0.5 101,700 - Atu3094 0.84 +0.4 101,847 + +0.3 101,847 + +0.2 101,855 - -0.0 101,920 + -0.7 102,097 - +1.0 102,251 + +0.4 102,405 + Atu3095 0.39 +0.6 102,550 + Atu3095 0.69 +0.0 102,554 - Atu3095 0.70 +0.5 102,600 + Atu3095 0.80 -0.4 102,884 + +0.4 102,990 + -0.3 103,064 - +0.9 103,146 - Atu3096 0.14 -0.5 103,147 - Atu3096 0.14 -0.3 103,174 + Atu3096 0.16 -0.1 103,256 - Atu3096 0.22 +1.0 103,258 + Atu3096 0.22 -2.7 103,258 + Atu3096 0.22 +0.8 103,258 + Atu3096 0.22 -0.3 103,266 + Atu3096 0.23 -0.1 103,266 - Atu3096 0.23 +0.2 103,266 - Atu3096 0.23 -0.6 103,360 - Atu3096 0.30 -0.2 103,365 - Atu3096 0.30 +0.3 103,472 + Atu3096 0.38 -0.2 103,566 - Atu3096 0.45 -0.4 103,566 - Atu3096 0.45 +0.0 103,566 - Atu3096 0.45 -0.5 103,566 - Atu3096 0.45 +0.0 103,594 + Atu3096 0.47 +1.0 103,594 + Atu3096 0.47 +0.1 103,639 + Atu3096 0.51 +0.8
Or see this region's nucleotide sequence