Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3053 and Atu3054 are separated by 408 nucleotides Atu3054 and Atu3055 are separated by 199 nucleotides
Atu3053: Atu3053 - peptide ABC transporter ATPase, at 50,111 to 51,757
Atu3053
Atu3054: Atu3054 - hypothetical protein, at 52,166 to 53,335
Atu3054
Atu3055: Atu3055 - hypothetical protein, at 53,535 to 54,800
Atu3055
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 51.178 kb on + strand, within Atu3053 at 51.178 kb on + strand, within Atu3053 at 51.197 kb on - strand, within Atu3053 at 51.332 kb on - strand, within Atu3053 at 51.343 kb on - strand, within Atu3053 at 51.367 kb on + strand, within Atu3053 at 51.375 kb on - strand, within Atu3053 at 51.459 kb on + strand, within Atu3053 at 51.488 kb on - strand, within Atu3053 at 51.507 kb on + strand, within Atu3053 at 51.580 kb on + strand, within Atu3053 at 51.866 kb on - strand at 51.957 kb on + strand at 52.017 kb on - strand at 52.023 kb on - strand at 52.023 kb on - strand at 52.064 kb on - strand at 52.200 kb on + strand at 52.222 kb on - strand at 52.269 kb on - strand at 52.346 kb on - strand, within Atu3054 at 52.409 kb on - strand, within Atu3054 at 52.414 kb on - strand, within Atu3054 at 52.441 kb on + strand, within Atu3054 at 52.449 kb on - strand, within Atu3054 at 52.449 kb on - strand, within Atu3054 at 52.544 kb on - strand, within Atu3054 at 52.559 kb on + strand, within Atu3054 at 52.561 kb on + strand, within Atu3054 at 52.567 kb on - strand, within Atu3054 at 52.571 kb on - strand, within Atu3054 at 52.733 kb on + strand, within Atu3054 at 52.773 kb on - strand, within Atu3054 at 52.824 kb on + strand, within Atu3054 at 52.824 kb on + strand, within Atu3054 at 52.824 kb on + strand, within Atu3054 at 52.832 kb on - strand, within Atu3054 at 52.913 kb on + strand, within Atu3054 at 52.961 kb on + strand, within Atu3054 at 53.012 kb on - strand, within Atu3054 at 53.082 kb on - strand, within Atu3054 at 53.097 kb on + strand, within Atu3054 at 53.097 kb on + strand, within Atu3054 at 53.115 kb on + strand, within Atu3054 at 53.148 kb on - strand, within Atu3054 at 53.295 kb on - strand at 53.319 kb on + strand at 53.394 kb on - strand at 53.405 kb on + strand at 53.407 kb on + strand at 53.407 kb on + strand at 53.424 kb on + strand at 53.424 kb on + strand at 53.424 kb on + strand at 53.432 kb on - strand at 53.432 kb on - strand at 53.448 kb on + strand at 53.524 kb on - strand at 53.656 kb on + strand at 53.664 kb on + strand, within Atu3055 at 53.691 kb on - strand, within Atu3055 at 53.872 kb on + strand, within Atu3055 at 53.940 kb on - strand, within Atu3055 at 54.063 kb on + strand, within Atu3055 at 54.063 kb on + strand, within Atu3055 at 54.071 kb on - strand, within Atu3055 at 54.076 kb on + strand, within Atu3055 at 54.170 kb on - strand, within Atu3055 at 54.187 kb on + strand, within Atu3055 at 54.281 kb on - strand, within Atu3055 at 54.314 kb on + strand, within Atu3055
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 51,178 + Atu3053 0.65 +1.6 51,178 + Atu3053 0.65 +0.4 51,197 - Atu3053 0.66 -0.1 51,332 - Atu3053 0.74 +0.1 51,343 - Atu3053 0.75 +0.1 51,367 + Atu3053 0.76 +0.1 51,375 - Atu3053 0.77 +0.1 51,459 + Atu3053 0.82 -0.2 51,488 - Atu3053 0.84 -0.0 51,507 + Atu3053 0.85 +0.3 51,580 + Atu3053 0.89 +0.1 51,866 - -0.2 51,957 + -0.5 52,017 - +1.3 52,023 - -0.8 52,023 - -1.3 52,064 - +0.4 52,200 + -0.2 52,222 - -0.1 52,269 - +1.4 52,346 - Atu3054 0.15 -0.1 52,409 - Atu3054 0.21 +0.3 52,414 - Atu3054 0.21 -0.1 52,441 + Atu3054 0.24 +0.4 52,449 - Atu3054 0.24 +0.4 52,449 - Atu3054 0.24 -0.4 52,544 - Atu3054 0.32 -0.2 52,559 + Atu3054 0.34 +0.1 52,561 + Atu3054 0.34 +1.0 52,567 - Atu3054 0.34 +1.4 52,571 - Atu3054 0.35 -0.1 52,733 + Atu3054 0.48 +0.2 52,773 - Atu3054 0.52 +3.0 52,824 + Atu3054 0.56 +0.1 52,824 + Atu3054 0.56 +0.3 52,824 + Atu3054 0.56 -0.3 52,832 - Atu3054 0.57 +0.4 52,913 + Atu3054 0.64 -2.0 52,961 + Atu3054 0.68 +1.4 53,012 - Atu3054 0.72 +0.3 53,082 - Atu3054 0.78 +0.5 53,097 + Atu3054 0.80 +1.2 53,097 + Atu3054 0.80 -0.2 53,115 + Atu3054 0.81 -0.1 53,148 - Atu3054 0.84 +0.5 53,295 - +0.1 53,319 + -0.8 53,394 - +0.5 53,405 + -0.5 53,407 + +0.2 53,407 + -0.9 53,424 + -0.2 53,424 + -0.3 53,424 + +0.2 53,432 - -0.1 53,432 - -0.1 53,448 + -0.0 53,524 - -0.0 53,656 + -0.2 53,664 + Atu3055 0.10 +0.4 53,691 - Atu3055 0.12 +0.2 53,872 + Atu3055 0.27 -0.0 53,940 - Atu3055 0.32 -0.0 54,063 + Atu3055 0.42 +0.1 54,063 + Atu3055 0.42 +0.4 54,071 - Atu3055 0.42 +1.4 54,076 + Atu3055 0.43 -0.4 54,170 - Atu3055 0.50 +0.2 54,187 + Atu3055 0.52 +0.3 54,281 - Atu3055 0.59 +1.0 54,314 + Atu3055 0.62 -0.8
Or see this region's nucleotide sequence