Strain Fitness in Agrobacterium fabrum C58 around Atu3773

Experiment: Phenoxyacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3772 and Atu3773 are separated by 2 nucleotidesAtu3773 and Atu3774 are separated by 73 nucleotides Atu3772: Atu3772 - hypothetical protein, at 855,841 to 856,890 Atu3772 Atu3773: Atu3773 - hypothetical protein, at 856,893 to 857,357 Atu3773 Atu3774: Atu3774 - capsule expression protein, at 857,431 to 858,426 Atu3774 Position (kb) 856 857 858Strain fitness (log2 ratio) -1 0 1 2at 855.915 kb on + strandat 855.923 kb on - strandat 855.923 kb on - strandat 855.933 kb on + strandat 855.949 kb on + strand, within Atu3772at 856.040 kb on + strand, within Atu3772at 856.285 kb on + strand, within Atu3772at 856.359 kb on - strand, within Atu3772at 856.391 kb on - strand, within Atu3772at 856.513 kb on - strand, within Atu3772at 856.565 kb on + strand, within Atu3772at 856.608 kb on - strand, within Atu3772at 856.614 kb on - strand, within Atu3772at 856.700 kb on + strand, within Atu3772at 856.772 kb on - strand, within Atu3772at 856.779 kb on - strand, within Atu3772at 856.790 kb on + strandat 856.834 kb on - strandat 856.923 kb on + strandat 856.931 kb on - strandat 856.968 kb on - strand, within Atu3773at 857.245 kb on + strand, within Atu3773at 857.257 kb on - strand, within Atu3773at 857.288 kb on - strand, within Atu3773at 857.366 kb on - strandat 857.366 kb on - strandat 857.428 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM
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855,915 + +0.3
855,923 - -0.6
855,923 - -0.5
855,933 + -0.1
855,949 + Atu3772 0.10 -0.0
856,040 + Atu3772 0.19 +0.2
856,285 + Atu3772 0.42 -0.2
856,359 - Atu3772 0.49 -0.3
856,391 - Atu3772 0.52 +0.9
856,513 - Atu3772 0.64 +0.1
856,565 + Atu3772 0.69 +0.4
856,608 - Atu3772 0.73 +0.1
856,614 - Atu3772 0.74 -0.1
856,700 + Atu3772 0.82 +2.7
856,772 - Atu3772 0.89 +0.1
856,779 - Atu3772 0.89 -0.2
856,790 + -0.4
856,834 - +0.2
856,923 + -0.2
856,931 - +0.8
856,968 - Atu3773 0.16 +0.7
857,245 + Atu3773 0.76 +0.2
857,257 - Atu3773 0.78 +0.6
857,288 - Atu3773 0.85 +0.6
857,366 - -0.2
857,366 - -0.3
857,428 + -0.8

Or see this region's nucleotide sequence