Strain Fitness in Agrobacterium fabrum C58 around Atu3645

Experiment: Phenoxyacetic 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3643 and Atu3644 are separated by 227 nucleotidesAtu3644 and Atu3645 are separated by 118 nucleotidesAtu3645 and Atu3646 overlap by 4 nucleotidesAtu3646 and Atu3647 are separated by 130 nucleotides Atu3643: Atu3643 - hypothetical protein, at 697,335 to 698,270 Atu3643 Atu3644: Atu3644 - hypothetical protein, at 698,498 to 698,953 Atu3644 Atu3645: Atu3645 - hypothetical protein, at 699,072 to 699,479 Atu3645 Atu3646: Atu3646 - hypothetical protein, at 699,476 to 699,901 Atu3646 Atu3647: Atu3647 - hypothetical protein, at 700,032 to 700,277 Atu3647 Position (kb) 699 700Strain fitness (log2 ratio) -1 0 1 2at 698.090 kb on - strand, within Atu3643at 698.110 kb on + strand, within Atu3643at 698.112 kb on + strand, within Atu3643at 698.112 kb on + strand, within Atu3643at 698.120 kb on - strand, within Atu3643at 698.130 kb on - strand, within Atu3643at 698.130 kb on - strand, within Atu3643at 698.159 kb on - strand, within Atu3643at 698.220 kb on - strandat 698.220 kb on - strandat 698.238 kb on - strandat 698.238 kb on - strandat 698.238 kb on - strandat 698.264 kb on + strandat 698.264 kb on + strandat 698.264 kb on + strandat 698.264 kb on + strandat 698.272 kb on - strandat 698.272 kb on - strandat 698.272 kb on - strandat 698.274 kb on + strandat 698.358 kb on + strandat 698.385 kb on - strandat 698.521 kb on + strandat 698.797 kb on + strand, within Atu3644at 698.864 kb on - strand, within Atu3644at 698.868 kb on + strand, within Atu3644at 698.868 kb on + strand, within Atu3644at 698.876 kb on - strand, within Atu3644at 698.876 kb on - strand, within Atu3644at 698.876 kb on - strand, within Atu3644at 698.969 kb on + strandat 699.037 kb on + strandat 699.038 kb on + strandat 699.045 kb on - strandat 699.069 kb on - strandat 699.076 kb on - strandat 699.147 kb on + strand, within Atu3645at 699.147 kb on + strand, within Atu3645at 699.178 kb on + strand, within Atu3645at 699.198 kb on + strand, within Atu3645at 699.198 kb on - strand, within Atu3645at 699.230 kb on + strand, within Atu3645at 699.254 kb on - strand, within Atu3645at 699.256 kb on + strand, within Atu3645at 699.275 kb on + strand, within Atu3645at 699.275 kb on + strand, within Atu3645at 699.473 kb on + strandat 699.474 kb on - strandat 699.502 kb on - strandat 699.542 kb on - strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.549 kb on + strand, within Atu3646at 699.557 kb on - strand, within Atu3646at 699.605 kb on + strand, within Atu3646at 699.607 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.623 kb on - strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.659 kb on + strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.667 kb on - strand, within Atu3646at 699.674 kb on + strand, within Atu3646at 699.684 kb on + strand, within Atu3646at 699.719 kb on + strand, within Atu3646at 699.727 kb on - strand, within Atu3646at 699.727 kb on - strand, within Atu3646at 699.732 kb on - strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.776 kb on + strand, within Atu3646at 699.784 kb on - strand, within Atu3646at 699.784 kb on - strand, within Atu3646at 699.870 kb on + strandat 699.938 kb on - strandat 699.938 kb on - strandat 699.940 kb on + strandat 699.940 kb on + strandat 699.948 kb on - strandat 699.948 kb on - strandat 699.955 kb on - strandat 700.001 kb on + strandat 700.032 kb on - strandat 700.060 kb on + strand, within Atu3647at 700.089 kb on + strand, within Atu3647at 700.096 kb on - strand, within Atu3647at 700.097 kb on - strand, within Atu3647at 700.192 kb on - strand, within Atu3647at 700.212 kb on + strand, within Atu3647at 700.218 kb on - strand, within Atu3647at 700.297 kb on + strandat 700.361 kb on + strandat 700.361 kb on + strandat 700.429 kb on + strandat 700.462 kb on + strandat 700.470 kb on - strandat 700.479 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM
remove
698,090 - Atu3643 0.81 -0.4
698,110 + Atu3643 0.83 +0.1
698,112 + Atu3643 0.83 +0.4
698,112 + Atu3643 0.83 -0.2
698,120 - Atu3643 0.84 -1.6
698,130 - Atu3643 0.85 +0.2
698,130 - Atu3643 0.85 +0.3
698,159 - Atu3643 0.88 +0.2
698,220 - +0.5
698,220 - -1.2
698,238 - -0.4
698,238 - -0.6
698,238 - -0.4
698,264 + -0.0
698,264 + -0.1
698,264 + +1.1
698,264 + +0.1
698,272 - -0.2
698,272 - +0.4
698,272 - +0.2
698,274 + +0.9
698,358 + -0.1
698,385 - +0.5
698,521 + +0.6
698,797 + Atu3644 0.66 +0.1
698,864 - Atu3644 0.80 +0.2
698,868 + Atu3644 0.81 +0.2
698,868 + Atu3644 0.81 +1.2
698,876 - Atu3644 0.83 -0.3
698,876 - Atu3644 0.83 -0.0
698,876 - Atu3644 0.83 -0.2
698,969 + +1.4
699,037 + -0.2
699,038 + -0.2
699,045 - -0.1
699,069 - +1.6
699,076 - +0.2
699,147 + Atu3645 0.18 +0.5
699,147 + Atu3645 0.18 +0.6
699,178 + Atu3645 0.26 +0.3
699,198 + Atu3645 0.31 +0.2
699,198 - Atu3645 0.31 +1.1
699,230 + Atu3645 0.39 +0.8
699,254 - Atu3645 0.45 -0.0
699,256 + Atu3645 0.45 -0.1
699,275 + Atu3645 0.50 +0.6
699,275 + Atu3645 0.50 +0.3
699,473 + +0.2
699,474 - +0.6
699,502 - +1.6
699,542 - Atu3646 0.15 -0.3
699,549 + Atu3646 0.17 +0.3
699,549 + Atu3646 0.17 -0.4
699,549 + Atu3646 0.17 +1.8
699,549 + Atu3646 0.17 +0.5
699,549 + Atu3646 0.17 +1.2
699,557 - Atu3646 0.19 -0.2
699,605 + Atu3646 0.30 +0.0
699,607 - Atu3646 0.31 +0.2
699,623 - Atu3646 0.35 -1.2
699,623 - Atu3646 0.35 -0.6
699,623 - Atu3646 0.35 -0.2
699,659 + Atu3646 0.43 -0.5
699,659 + Atu3646 0.43 -0.2
699,659 + Atu3646 0.43 +1.4
699,659 + Atu3646 0.43 +0.1
699,667 - Atu3646 0.45 +0.3
699,667 - Atu3646 0.45 +2.2
699,667 - Atu3646 0.45 +0.1
699,667 - Atu3646 0.45 -0.6
699,667 - Atu3646 0.45 +0.2
699,674 + Atu3646 0.46 +0.6
699,684 + Atu3646 0.49 -0.8
699,719 + Atu3646 0.57 +0.2
699,727 - Atu3646 0.59 -0.1
699,727 - Atu3646 0.59 +0.1
699,732 - Atu3646 0.60 -0.1
699,776 + Atu3646 0.70 +1.3
699,776 + Atu3646 0.70 -0.1
699,776 + Atu3646 0.70 -0.1
699,784 - Atu3646 0.72 +1.6
699,784 - Atu3646 0.72 +0.0
699,870 + +0.5
699,938 - +0.0
699,938 - +0.1
699,940 + -0.8
699,940 + -1.0
699,948 - -0.4
699,948 - +0.1
699,955 - +0.2
700,001 + -0.3
700,032 - +0.9
700,060 + Atu3647 0.11 +0.9
700,089 + Atu3647 0.23 -0.3
700,096 - Atu3647 0.26 +0.3
700,097 - Atu3647 0.26 +1.3
700,192 - Atu3647 0.65 -0.1
700,212 + Atu3647 0.73 -0.1
700,218 - Atu3647 0.76 -0.6
700,297 + -0.4
700,361 + -1.0
700,361 + -0.0
700,429 + -0.2
700,462 + -0.5
700,470 - -0.2
700,479 + +0.5

Or see this region's nucleotide sequence