Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3050 and Atu3051 are separated by 1 nucleotides Atu3051 and Atu3052 overlap by 4 nucleotides Atu3052 and Atu3053 are separated by 288 nucleotides
Atu3050: Atu3050 - AgaE protein, at 47,297 to 48,628
Atu3050
Atu3051: Atu3051 - agropine synthesis reductase, at 48,630 to 49,340
Atu3051
Atu3052: Atu3052 - MarR family transcriptional regulator, at 49,337 to 49,822
Atu3052
Atu3053: Atu3053 - peptide ABC transporter ATPase, at 50,111 to 51,757
Atu3053
Position (kb)
49
50 Strain fitness (log2 ratio)
-1
0
1 at 48.409 kb on - strand, within Atu3050 at 48.464 kb on + strand, within Atu3050 at 48.468 kb on + strand, within Atu3050 at 48.493 kb on + strand, within Atu3050 at 48.529 kb on + strand at 48.576 kb on + strand at 48.604 kb on - strand at 48.626 kb on - strand at 48.717 kb on + strand, within Atu3051 at 48.826 kb on - strand, within Atu3051 at 48.990 kb on - strand, within Atu3051 at 49.011 kb on - strand, within Atu3051 at 49.011 kb on - strand, within Atu3051 at 49.048 kb on + strand, within Atu3051 at 49.122 kb on + strand, within Atu3051 at 49.160 kb on + strand, within Atu3051 at 49.173 kb on - strand, within Atu3051 at 49.175 kb on + strand, within Atu3051 at 49.196 kb on + strand, within Atu3051 at 49.201 kb on + strand, within Atu3051 at 49.209 kb on - strand, within Atu3051 at 49.219 kb on + strand, within Atu3051 at 49.219 kb on + strand, within Atu3051 at 49.222 kb on - strand, within Atu3051 at 49.227 kb on - strand, within Atu3051 at 49.267 kb on + strand, within Atu3051 at 49.282 kb on + strand at 49.485 kb on + strand, within Atu3052 at 49.487 kb on + strand, within Atu3052 at 49.495 kb on - strand, within Atu3052 at 49.682 kb on + strand, within Atu3052 at 49.756 kb on - strand, within Atu3052 at 50.029 kb on - strand at 50.117 kb on - strand at 50.138 kb on + strand at 50.138 kb on + strand at 50.153 kb on + strand at 50.224 kb on + strand at 50.295 kb on - strand, within Atu3053 at 50.370 kb on - strand, within Atu3053 at 50.371 kb on + strand, within Atu3053 at 50.372 kb on + strand, within Atu3053 at 50.378 kb on + strand, within Atu3053 at 50.379 kb on - strand, within Atu3053 at 50.436 kb on + strand, within Atu3053 at 50.527 kb on + strand, within Atu3053 at 50.546 kb on + strand, within Atu3053 at 50.551 kb on + strand, within Atu3053 at 50.598 kb on + strand, within Atu3053 at 50.639 kb on + strand, within Atu3053 at 50.798 kb on + strand, within Atu3053 at 50.815 kb on + strand, within Atu3053
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 48,409 - Atu3050 0.83 +0.4 48,464 + Atu3050 0.88 +0.5 48,468 + Atu3050 0.88 -0.2 48,493 + Atu3050 0.90 -0.5 48,529 + +0.1 48,576 + +1.0 48,604 - +0.2 48,626 - -1.1 48,717 + Atu3051 0.12 -0.3 48,826 - Atu3051 0.28 +1.0 48,990 - Atu3051 0.51 +0.2 49,011 - Atu3051 0.54 -0.7 49,011 - Atu3051 0.54 +0.7 49,048 + Atu3051 0.59 -0.8 49,122 + Atu3051 0.69 +0.0 49,160 + Atu3051 0.75 -0.6 49,173 - Atu3051 0.76 -0.1 49,175 + Atu3051 0.77 +0.1 49,196 + Atu3051 0.80 +0.0 49,201 + Atu3051 0.80 +0.0 49,209 - Atu3051 0.81 +0.6 49,219 + Atu3051 0.83 +0.7 49,219 + Atu3051 0.83 -0.1 49,222 - Atu3051 0.83 +0.0 49,227 - Atu3051 0.84 +0.1 49,267 + Atu3051 0.90 +0.0 49,282 + +0.1 49,485 + Atu3052 0.30 +0.4 49,487 + Atu3052 0.31 -0.1 49,495 - Atu3052 0.33 +0.4 49,682 + Atu3052 0.71 +0.4 49,756 - Atu3052 0.86 +0.1 50,029 - +1.0 50,117 - -0.4 50,138 + -0.1 50,138 + -0.1 50,153 + +0.2 50,224 + +0.1 50,295 - Atu3053 0.11 +0.4 50,370 - Atu3053 0.16 -0.1 50,371 + Atu3053 0.16 +0.0 50,372 + Atu3053 0.16 +0.2 50,378 + Atu3053 0.16 +0.1 50,379 - Atu3053 0.16 +0.4 50,436 + Atu3053 0.20 -0.5 50,527 + Atu3053 0.25 +0.8 50,546 + Atu3053 0.26 +0.6 50,551 + Atu3053 0.27 -0.2 50,598 + Atu3053 0.30 +0.4 50,639 + Atu3053 0.32 +1.5 50,798 + Atu3053 0.42 -0.7 50,815 + Atu3053 0.43 +0.2
Or see this region's nucleotide sequence