Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2700 and Atu2701 are separated by 4 nucleotides Atu2701 and Atu2702 overlap by 19 nucleotides Atu2702 and Atu2703 are separated by 268 nucleotides Atu2703 and Atu2704 are separated by 51 nucleotides
Atu2700: Atu2700 - 16S rRNA processing protein, at 2,684,495 to 2,685,034
Atu2700
Atu2701: Atu2701 - tRNA (guanine-N(1)-)-methyltransferase, at 2,685,039 to 2,685,737
Atu2701
Atu2702: Atu2702 - hypothetical protein, at 2,685,719 to 2,686,465
Atu2702
Atu2703: Atu2703 - 50S ribosomal protein L19, at 2,686,734 to 2,687,273
Atu2703
Atu2704: Atu2704 - hypothetical protein, at 2,687,325 to 2,687,555
Atu2704
Position (kb)
2685
2686
2687 Strain fitness (log2 ratio)
-2
-1
0
1 at 2685.748 kb on + strand at 2685.756 kb on - strand at 2685.799 kb on + strand, within Atu2702 at 2685.817 kb on - strand, within Atu2702 at 2686.009 kb on - strand, within Atu2702 at 2686.058 kb on + strand, within Atu2702 at 2686.086 kb on + strand, within Atu2702 at 2686.093 kb on + strand, within Atu2702 at 2686.101 kb on - strand, within Atu2702 at 2686.243 kb on - strand, within Atu2702 at 2686.295 kb on + strand, within Atu2702 at 2686.376 kb on + strand, within Atu2702 at 2686.377 kb on + strand, within Atu2702 at 2686.384 kb on - strand, within Atu2702 at 2686.384 kb on - strand, within Atu2702 at 2686.384 kb on - strand, within Atu2702 at 2686.431 kb on + strand at 2686.431 kb on + strand at 2686.439 kb on - strand at 2686.439 kb on - strand at 2686.471 kb on + strand at 2686.479 kb on + strand at 2687.386 kb on + strand, within Atu2704
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 2,685,748 + -0.5 2,685,756 - +1.1 2,685,799 + Atu2702 0.11 -0.4 2,685,817 - Atu2702 0.13 +1.0 2,686,009 - Atu2702 0.39 +0.1 2,686,058 + Atu2702 0.45 +0.1 2,686,086 + Atu2702 0.49 +0.6 2,686,093 + Atu2702 0.50 -0.1 2,686,101 - Atu2702 0.51 +0.7 2,686,243 - Atu2702 0.70 -0.5 2,686,295 + Atu2702 0.77 +0.2 2,686,376 + Atu2702 0.88 +0.3 2,686,377 + Atu2702 0.88 +0.4 2,686,384 - Atu2702 0.89 +0.7 2,686,384 - Atu2702 0.89 -0.1 2,686,384 - Atu2702 0.89 +0.9 2,686,431 + -0.3 2,686,431 + -1.1 2,686,439 - -0.2 2,686,439 - +0.2 2,686,471 + -2.5 2,686,479 + -0.2 2,687,386 + Atu2704 0.26 -0.0
Or see this region's nucleotide sequence