Strain Fitness in Agrobacterium fabrum C58 around Atu1699
Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phenoxyacetic 5 mM |
---|---|---|---|---|---|
remove | |||||
1,683,210 | - | Atu1697 | 0.72 | +0.2 | |
1,683,371 | + | Atu1697 | 0.85 | +0.5 | |
1,683,431 | + | -0.1 | |||
1,683,545 | + | -0.3 | |||
1,683,695 | + | Atu1698 | 0.23 | -0.3 | |
1,683,703 | - | Atu1698 | 0.24 | +0.1 | |
1,683,751 | - | Atu1698 | 0.32 | +0.1 | |
1,683,968 | + | Atu1698 | 0.65 | -0.3 | |
1,683,976 | - | Atu1698 | 0.66 | +0.0 | |
1,684,020 | - | Atu1698 | 0.73 | -0.0 | |
1,684,120 | + | Atu1698 | 0.88 | -0.3 | |
1,684,128 | - | Atu1698 | 0.89 | +0.3 | |
1,684,128 | - | Atu1698 | 0.89 | -0.1 | |
1,684,298 | - | Atu1699 | 0.20 | -0.2 | |
1,684,350 | - | Atu1699 | 0.30 | -1.3 | |
1,684,568 | - | Atu1699 | 0.72 | -0.0 | |
1,684,784 | + | -0.3 |
Or see this region's nucleotide sequence