Strain Fitness in Agrobacterium fabrum C58 around Atu0908

Experiment: Phenoxyacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0906 and Atu0907 are separated by 102 nucleotidesAtu0907 and Atu0908 are separated by 86 nucleotidesAtu0908 and Atu0909 are separated by 201 nucleotides Atu0906: Atu0906 - Hemolysin III, at 896,956 to 897,624 Atu0906 Atu0907: Atu0907 - Phosphinothricin acetyltransferase, at 897,727 to 898,224 Atu0907 Atu0908: Atu0908 - transcriptional regulator, at 898,311 to 898,718 Atu0908 Atu0909: Atu0909 - Na+/H+ antiporter, at 898,920 to 901,289 Atu0909 Position (kb) 898 899Strain fitness (log2 ratio) -1 0 1at 897.367 kb on - strand, within Atu0906at 897.415 kb on - strand, within Atu0906at 897.425 kb on - strand, within Atu0906at 897.426 kb on - strand, within Atu0906at 897.480 kb on + strand, within Atu0906at 897.525 kb on - strand, within Atu0906at 897.638 kb on + strandat 897.695 kb on - strandat 897.723 kb on - strandat 897.723 kb on - strandat 897.773 kb on - strandat 897.801 kb on + strand, within Atu0907at 897.914 kb on + strand, within Atu0907at 897.958 kb on - strand, within Atu0907at 897.964 kb on + strand, within Atu0907at 898.108 kb on + strand, within Atu0907at 898.130 kb on - strand, within Atu0907at 898.202 kb on + strandat 898.202 kb on + strandat 898.202 kb on + strandat 898.210 kb on - strandat 898.217 kb on - strandat 898.227 kb on + strandat 898.249 kb on + strandat 898.326 kb on - strandat 898.429 kb on - strand, within Atu0908at 898.468 kb on - strand, within Atu0908at 898.569 kb on - strand, within Atu0908at 898.669 kb on + strand, within Atu0908at 898.693 kb on + strandat 898.694 kb on - strandat 898.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM
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897,367 - Atu0906 0.61 +0.3
897,415 - Atu0906 0.69 +0.1
897,425 - Atu0906 0.70 -0.6
897,426 - Atu0906 0.70 -0.3
897,480 + Atu0906 0.78 +0.0
897,525 - Atu0906 0.85 +1.2
897,638 + +0.4
897,695 - -0.3
897,723 - +1.0
897,723 - +0.1
897,773 - +0.1
897,801 + Atu0907 0.15 -0.1
897,914 + Atu0907 0.38 +0.4
897,958 - Atu0907 0.46 -1.6
897,964 + Atu0907 0.48 +1.1
898,108 + Atu0907 0.77 -0.8
898,130 - Atu0907 0.81 -0.1
898,202 + +0.2
898,202 + +1.1
898,202 + +0.1
898,210 - -0.5
898,217 - -0.2
898,227 + -0.7
898,249 + -0.2
898,326 - -0.0
898,429 - Atu0908 0.29 +0.4
898,468 - Atu0908 0.38 -0.1
898,569 - Atu0908 0.63 -0.2
898,669 + Atu0908 0.88 +1.1
898,693 + -0.3
898,694 - -0.7
898,720 + +0.0

Or see this region's nucleotide sequence