Strain Fitness in Agrobacterium fabrum C58 around Atu0908
Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phenoxyacetic 5 mM |
---|---|---|---|---|---|
remove | |||||
897,367 | - | Atu0906 | 0.61 | +0.3 | |
897,415 | - | Atu0906 | 0.69 | +0.1 | |
897,425 | - | Atu0906 | 0.70 | -0.6 | |
897,426 | - | Atu0906 | 0.70 | -0.3 | |
897,480 | + | Atu0906 | 0.78 | +0.0 | |
897,525 | - | Atu0906 | 0.85 | +1.2 | |
897,638 | + | +0.4 | |||
897,695 | - | -0.3 | |||
897,723 | - | +1.0 | |||
897,723 | - | +0.1 | |||
897,773 | - | +0.1 | |||
897,801 | + | Atu0907 | 0.15 | -0.1 | |
897,914 | + | Atu0907 | 0.38 | +0.4 | |
897,958 | - | Atu0907 | 0.46 | -1.6 | |
897,964 | + | Atu0907 | 0.48 | +1.1 | |
898,108 | + | Atu0907 | 0.77 | -0.8 | |
898,130 | - | Atu0907 | 0.81 | -0.1 | |
898,202 | + | +0.2 | |||
898,202 | + | +1.1 | |||
898,202 | + | +0.1 | |||
898,210 | - | -0.5 | |||
898,217 | - | -0.2 | |||
898,227 | + | -0.7 | |||
898,249 | + | -0.2 | |||
898,326 | - | -0.0 | |||
898,429 | - | Atu0908 | 0.29 | +0.4 | |
898,468 | - | Atu0908 | 0.38 | -0.1 | |
898,569 | - | Atu0908 | 0.63 | -0.2 | |
898,669 | + | Atu0908 | 0.88 | +1.1 | |
898,693 | + | -0.3 | |||
898,694 | - | -0.7 | |||
898,720 | + | +0.0 |
Or see this region's nucleotide sequence