Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0877 and Atu0878 overlap by 9 nucleotides Atu0878 and Atu0879 are separated by 134 nucleotides Atu0879 and Atu0881 are separated by 227 nucleotides Atu0881 and Atu0882 are separated by 87 nucleotides
Atu0877: Atu0877 - hypothetical protein, at 873,564 to 874,415
Atu0877
Atu0878: Atu0878 - hypothetical protein, at 874,407 to 875,138
Atu0878
Atu0879: Atu0879 - RhtB family transporter, at 875,273 to 875,917
Atu0879
Atu0881: Atu0881 - cytochrome C-556, at 876,145 to 876,552
Atu0881
Atu0882: Atu0882 - hypothetical protein, at 876,640 to 877,560
Atu0882
Position (kb) 875
876 Strain fitness (log2 ratio) -2
-1
0
1
2 at 874.330 kb on - strand at 874.434 kb on - strand at 874.437 kb on + strand at 874.445 kb on - strand at 874.615 kb on + strand, within Atu0878 at 874.672 kb on + strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.690 kb on - strand, within Atu0878 at 874.736 kb on - strand, within Atu0878 at 874.761 kb on - strand, within Atu0878 at 874.797 kb on - strand, within Atu0878 at 874.879 kb on + strand, within Atu0878 at 874.940 kb on + strand, within Atu0878 at 874.948 kb on - strand, within Atu0878 at 874.996 kb on + strand, within Atu0878 at 875.004 kb on - strand, within Atu0878 at 875.010 kb on - strand, within Atu0878 at 875.110 kb on + strand at 875.118 kb on - strand at 875.162 kb on - strand at 875.264 kb on + strand at 875.330 kb on - strand at 875.336 kb on + strand at 875.342 kb on + strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.359 kb on + strand, within Atu0879 at 875.533 kb on - strand, within Atu0879 at 875.543 kb on - strand, within Atu0879 at 875.629 kb on - strand, within Atu0879 at 875.681 kb on - strand, within Atu0879 at 875.730 kb on + strand, within Atu0879 at 875.730 kb on + strand, within Atu0879 at 875.738 kb on - strand, within Atu0879 at 875.738 kb on - strand, within Atu0879 at 875.934 kb on + strand at 875.993 kb on + strand at 876.150 kb on + strand at 876.233 kb on + strand, within Atu0881 at 876.288 kb on + strand, within Atu0881 at 876.321 kb on + strand, within Atu0881 at 876.361 kb on - strand, within Atu0881 at 876.370 kb on - strand, within Atu0881 at 876.403 kb on - strand, within Atu0881 at 876.403 kb on - strand, within Atu0881 at 876.419 kb on - strand, within Atu0881 at 876.419 kb on - strand, within Atu0881 at 876.434 kb on - strand, within Atu0881 at 876.539 kb on - strand at 876.619 kb on + strand at 876.627 kb on - strand at 876.743 kb on + strand, within Atu0882 at 876.763 kb on - strand, within Atu0882 at 876.769 kb on + strand, within Atu0882 at 876.792 kb on + strand, within Atu0882 at 876.792 kb on + strand, within Atu0882 at 876.800 kb on - strand, within Atu0882 at 876.816 kb on + strand, within Atu0882 at 876.824 kb on - strand, within Atu0882 at 876.840 kb on + strand, within Atu0882 at 876.848 kb on - strand, within Atu0882 at 876.904 kb on - strand, within Atu0882
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 874,330 - +0.1 874,434 - +1.4 874,437 + +0.3 874,445 - -0.3 874,615 + Atu0878 0.28 -1.7 874,672 + Atu0878 0.36 -0.2 874,680 - Atu0878 0.37 -0.2 874,680 - Atu0878 0.37 -0.2 874,680 - Atu0878 0.37 +0.8 874,690 - Atu0878 0.39 -0.1 874,736 - Atu0878 0.45 -0.8 874,761 - Atu0878 0.48 -0.1 874,797 - Atu0878 0.53 +0.2 874,879 + Atu0878 0.64 -0.0 874,940 + Atu0878 0.73 +1.3 874,948 - Atu0878 0.74 +0.6 874,996 + Atu0878 0.80 +1.1 875,004 - Atu0878 0.82 +0.6 875,010 - Atu0878 0.82 +2.3 875,110 + -0.0 875,118 - -0.2 875,162 - -2.1 875,264 + -0.1 875,330 - -0.0 875,336 + -0.2 875,342 + Atu0879 0.11 -0.2 875,350 - Atu0879 0.12 +0.3 875,350 - Atu0879 0.12 +0.9 875,359 + Atu0879 0.13 +0.9 875,533 - Atu0879 0.40 -0.1 875,543 - Atu0879 0.42 +0.4 875,629 - Atu0879 0.55 +0.5 875,681 - Atu0879 0.63 +0.3 875,730 + Atu0879 0.71 +0.1 875,730 + Atu0879 0.71 +0.2 875,738 - Atu0879 0.72 -1.9 875,738 - Atu0879 0.72 -0.1 875,934 + +0.4 875,993 + +0.9 876,150 + -0.0 876,233 + Atu0881 0.22 +0.3 876,288 + Atu0881 0.35 +1.0 876,321 + Atu0881 0.43 +0.6 876,361 - Atu0881 0.53 +0.4 876,370 - Atu0881 0.55 +1.3 876,403 - Atu0881 0.63 +0.6 876,403 - Atu0881 0.63 -1.2 876,419 - Atu0881 0.67 +0.0 876,419 - Atu0881 0.67 -0.1 876,434 - Atu0881 0.71 -0.3 876,539 - -0.3 876,619 + +0.1 876,627 - +0.5 876,743 + Atu0882 0.11 +0.1 876,763 - Atu0882 0.13 +0.1 876,769 + Atu0882 0.14 +0.6 876,792 + Atu0882 0.17 +0.3 876,792 + Atu0882 0.17 -0.2 876,800 - Atu0882 0.17 -0.2 876,816 + Atu0882 0.19 +0.1 876,824 - Atu0882 0.20 -0.3 876,840 + Atu0882 0.22 -0.1 876,848 - Atu0882 0.23 +0.3 876,904 - Atu0882 0.29 -0.4
Or see this region's nucleotide sequence