Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0874 and Atu0875 are separated by 5 nucleotides Atu0875 and Atu0876 are separated by 85 nucleotides Atu0876 and Atu0877 are separated by 112 nucleotides Atu0877 and Atu0878 overlap by 9 nucleotides
Atu0874: Atu0874 - acetyltransferase, at 871,736 to 872,278
Atu0874
Atu0875: Atu0875 - hypothetical protein, at 872,284 to 872,763
Atu0875
Atu0876: Atu0876 - superoxide dismutase, at 872,849 to 873,451
Atu0876
Atu0877: Atu0877 - hypothetical protein, at 873,564 to 874,415
Atu0877
Atu0878: Atu0878 - hypothetical protein, at 874,407 to 875,138
Atu0878
Position (kb) 872
873
874 Strain fitness (log2 ratio) -1
0
1 at 871.905 kb on - strand, within Atu0874 at 872.042 kb on + strand, within Atu0874 at 872.075 kb on + strand, within Atu0874 at 872.174 kb on - strand, within Atu0874 at 872.199 kb on + strand, within Atu0874 at 872.244 kb on + strand at 872.255 kb on + strand at 872.349 kb on - strand, within Atu0875 at 872.354 kb on + strand, within Atu0875 at 872.491 kb on - strand, within Atu0875 at 872.499 kb on + strand, within Atu0875 at 872.499 kb on + strand, within Atu0875 at 872.499 kb on + strand, within Atu0875 at 872.520 kb on - strand, within Atu0875 at 872.606 kb on - strand, within Atu0875 at 872.606 kb on - strand, within Atu0875 at 872.631 kb on - strand, within Atu0875 at 872.658 kb on - strand, within Atu0875 at 872.671 kb on + strand, within Atu0875 at 872.770 kb on + strand at 872.780 kb on + strand at 872.786 kb on + strand at 872.807 kb on + strand at 872.815 kb on - strand at 872.838 kb on - strand at 873.017 kb on - strand, within Atu0876 at 873.186 kb on - strand, within Atu0876 at 873.222 kb on - strand, within Atu0876 at 873.504 kb on - strand at 873.568 kb on - strand at 873.650 kb on - strand, within Atu0877 at 873.704 kb on - strand, within Atu0877 at 873.789 kb on - strand, within Atu0877 at 874.013 kb on + strand, within Atu0877 at 874.021 kb on - strand, within Atu0877 at 874.043 kb on + strand, within Atu0877 at 874.043 kb on + strand, within Atu0877 at 874.090 kb on + strand, within Atu0877 at 874.180 kb on - strand, within Atu0877 at 874.192 kb on + strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.330 kb on - strand at 874.434 kb on - strand at 874.437 kb on + strand at 874.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 871,905 - Atu0874 0.31 +0.1 872,042 + Atu0874 0.56 +1.1 872,075 + Atu0874 0.62 +0.3 872,174 - Atu0874 0.81 +0.1 872,199 + Atu0874 0.85 -0.4 872,244 + +0.4 872,255 + -0.5 872,349 - Atu0875 0.14 -0.0 872,354 + Atu0875 0.15 +0.0 872,491 - Atu0875 0.43 +0.6 872,499 + Atu0875 0.45 +0.4 872,499 + Atu0875 0.45 -0.1 872,499 + Atu0875 0.45 +0.0 872,520 - Atu0875 0.49 +1.4 872,606 - Atu0875 0.67 +0.4 872,606 - Atu0875 0.67 -0.4 872,631 - Atu0875 0.72 +1.1 872,658 - Atu0875 0.78 -0.2 872,671 + Atu0875 0.81 +0.2 872,770 + -0.3 872,780 + -0.4 872,786 + +0.3 872,807 + -0.2 872,815 - +0.4 872,838 - -0.2 873,017 - Atu0876 0.28 -0.2 873,186 - Atu0876 0.56 -1.2 873,222 - Atu0876 0.62 -0.5 873,504 - +0.2 873,568 - +0.3 873,650 - Atu0877 0.10 -0.8 873,704 - Atu0877 0.16 -0.4 873,789 - Atu0877 0.26 -0.7 874,013 + Atu0877 0.53 -0.0 874,021 - Atu0877 0.54 -0.1 874,043 + Atu0877 0.56 +0.2 874,043 + Atu0877 0.56 +0.3 874,090 + Atu0877 0.62 -0.5 874,180 - Atu0877 0.72 +0.1 874,192 + Atu0877 0.74 +0.1 874,200 - Atu0877 0.75 +0.2 874,200 - Atu0877 0.75 +0.0 874,200 - Atu0877 0.75 +0.9 874,200 - Atu0877 0.75 -0.7 874,330 - +0.1 874,434 - +1.4 874,437 + +0.3 874,445 - -0.3
Or see this region's nucleotide sequence