Strain Fitness in Agrobacterium fabrum C58 around Atu0662
Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phenoxyacetic 5 mM |
---|---|---|---|---|---|
remove | |||||
655,791 | - | Atu0661 | 0.41 | -0.8 | |
655,806 | + | Atu0661 | 0.42 | -0.1 | |
655,813 | - | Atu0661 | 0.43 | -0.1 | |
655,814 | - | Atu0661 | 0.43 | -0.3 | |
655,841 | + | Atu0661 | 0.45 | -0.1 | |
655,847 | + | Atu0661 | 0.46 | -0.0 | |
655,953 | - | Atu0661 | 0.53 | -0.8 | |
656,059 | + | Atu0661 | 0.61 | +0.2 | |
656,084 | - | Atu0661 | 0.63 | -0.0 | |
656,175 | + | Atu0661 | 0.70 | +0.2 | |
656,208 | + | Atu0661 | 0.72 | -0.1 | |
656,232 | + | Atu0661 | 0.74 | -0.1 | |
656,357 | - | Atu0661 | 0.84 | -1.0 | |
656,396 | - | Atu0661 | 0.87 | +0.1 | |
656,426 | - | Atu0661 | 0.89 | +0.1 | |
656,426 | - | Atu0661 | 0.89 | -0.3 | |
656,426 | - | Atu0661 | 0.89 | +0.1 | |
656,501 | + | +0.3 | |||
656,577 | + | +0.1 | |||
656,739 | + | -0.0 | |||
657,004 | - | Atu0662 | 0.41 | +0.7 | |
657,012 | + | Atu0662 | 0.42 | +1.0 | |
657,012 | + | Atu0662 | 0.42 | +0.3 | |
657,044 | - | Atu0662 | 0.46 | +1.0 | |
657,092 | - | Atu0662 | 0.52 | -0.2 | |
657,266 | - | Atu0662 | 0.75 | +0.6 | |
657,285 | + | Atu0662 | 0.77 | +0.5 | |
657,325 | - | Atu0662 | 0.82 | -0.2 | |
657,335 | + | Atu0662 | 0.84 | -0.5 | |
657,429 | - | -0.0 | |||
657,469 | - | +0.3 | |||
657,621 | + | -0.2 | |||
657,631 | + | +0.0 | |||
657,745 | + | -0.6 | |||
657,813 | + | -0.8 | |||
657,819 | - | +0.1 | |||
657,976 | + | Atu0663 | 0.17 | -0.3 | |
658,115 | + | Atu0663 | 0.28 | -0.2 | |
658,255 | + | Atu0663 | 0.39 | -0.4 | |
658,279 | - | Atu0663 | 0.41 | -0.3 | |
658,289 | + | Atu0663 | 0.42 | +0.8 | |
658,307 | - | Atu0663 | 0.43 | -0.5 | |
658,338 | + | Atu0663 | 0.46 | +0.2 | |
658,362 | + | Atu0663 | 0.48 | -0.1 | |
658,388 | - | Atu0663 | 0.50 | -0.3 |
Or see this region's nucleotide sequence