Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0182 and Atu0183 are separated by 9 nucleotides Atu0183 and Atu0184 are separated by 141 nucleotides Atu0184 and Atu0185 are separated by 27 nucleotides Atu0185 and Atu0186 are separated by 99 nucleotides
Atu0182: Atu0182 - transcriptional regulator, GntR family, at 185,021 to 185,758
Atu0182
Atu0183: Atu0183 - dihydrodipicolinate reductase, at 185,768 to 186,595
Atu0183
Atu0184: Atu0184 - glucokinase, at 186,737 to 187,759
Atu0184
Atu0185: Atu0185 - methylglyoxal synthase, at 187,787 to 188,170
Atu0185
Atu0186: Atu0186 - penicillin-insensitive murein endopeptidase, at 188,270 to 189,325
Atu0186
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 186.718 kb on - strand at 186.721 kb on + strand at 186.872 kb on - strand, within Atu0184 at 186.952 kb on + strand, within Atu0184 at 187.022 kb on - strand, within Atu0184 at 187.022 kb on - strand, within Atu0184 at 187.580 kb on + strand, within Atu0184 at 187.588 kb on - strand, within Atu0184 at 187.665 kb on + strand at 187.788 kb on - strand at 187.858 kb on - strand, within Atu0185 at 187.908 kb on - strand, within Atu0185 at 187.967 kb on + strand, within Atu0185 at 187.988 kb on - strand, within Atu0185 at 188.220 kb on - strand at 188.355 kb on - strand at 188.382 kb on - strand, within Atu0186 at 188.382 kb on - strand, within Atu0186 at 188.440 kb on + strand, within Atu0186 at 188.507 kb on - strand, within Atu0186 at 188.530 kb on + strand, within Atu0186 at 188.575 kb on - strand, within Atu0186 at 188.575 kb on - strand, within Atu0186 at 188.705 kb on - strand, within Atu0186 at 188.745 kb on + strand, within Atu0186
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 186,718 - -0.1 186,721 + +1.3 186,872 - Atu0184 0.13 -3.2 186,952 + Atu0184 0.21 -0.9 187,022 - Atu0184 0.28 -0.5 187,022 - Atu0184 0.28 -2.7 187,580 + Atu0184 0.82 -1.4 187,588 - Atu0184 0.83 -0.5 187,665 + -1.9 187,788 - -0.4 187,858 - Atu0185 0.18 +0.1 187,908 - Atu0185 0.32 -0.4 187,967 + Atu0185 0.47 -0.7 187,988 - Atu0185 0.52 -0.3 188,220 - -0.3 188,355 - +0.6 188,382 - Atu0186 0.11 -0.1 188,382 - Atu0186 0.11 +0.6 188,440 + Atu0186 0.16 -0.2 188,507 - Atu0186 0.22 +0.5 188,530 + Atu0186 0.25 +0.4 188,575 - Atu0186 0.29 -0.3 188,575 - Atu0186 0.29 +0.6 188,705 - Atu0186 0.41 +0.0 188,745 + Atu0186 0.45 -0.1
Or see this region's nucleotide sequence