Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0139 and Atu0140 overlap by 1 nucleotides Atu0140 and Atu0141 are separated by 6 nucleotides Atu0141 and Atu0142 are separated by 76 nucleotides
Atu0139: Atu0139 - cytochrome o ubiquinol oxidase subunit IV, at 142,569 to 142,961
Atu0139
Atu0140: Atu0140 - cytochrome o ubiquinol oxidase subunit III, at 142,961 to 143,587
Atu0140
Atu0141: Atu0141 - cytochrome O ubiquinol oxidase subunit I, at 143,594 to 145,597
Atu0141
Atu0142: Atu0142 - cytochrome o ubiquinol oxidase subunit II, at 145,674 to 146,672
Atu0142
Position (kb) 143
144
145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.083 kb on - strand, within Atu0140 at 143.093 kb on - strand, within Atu0140 at 143.227 kb on - strand, within Atu0140 at 143.728 kb on - strand at 143.743 kb on - strand at 143.822 kb on + strand, within Atu0141 at 143.971 kb on - strand, within Atu0141 at 144.754 kb on - strand, within Atu0141 at 145.458 kb on - strand at 145.492 kb on + strand at 145.808 kb on - strand, within Atu0142 at 146.054 kb on + strand, within Atu0142 at 146.179 kb on + strand, within Atu0142 at 146.446 kb on + strand, within Atu0142
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 143,083 - Atu0140 0.19 -1.9 143,093 - Atu0140 0.21 +1.0 143,227 - Atu0140 0.42 -2.0 143,728 - -0.4 143,743 - -0.1 143,822 + Atu0141 0.11 -1.7 143,971 - Atu0141 0.19 +1.8 144,754 - Atu0141 0.58 -1.5 145,458 - -2.3 145,492 + -0.4 145,808 - Atu0142 0.13 -1.5 146,054 + Atu0142 0.38 +0.3 146,179 + Atu0142 0.51 -1.0 146,446 + Atu0142 0.77 -1.2
Or see this region's nucleotide sequence