Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0242 and Atu0243 overlap by 4 nucleotides Atu0243 and Atu8117 are separated by 66 nucleotides Atu8117 and Atu0245 are separated by 96 nucleotides Atu0245 and Atu0246 are separated by 17 nucleotides
Atu0242: Atu0242 - carbon-nitrogen hydrolase, at 241,938 to 242,807
Atu0242
Atu0243: Atu0243 - hypothetical protein, at 242,804 to 243,415
Atu0243
Atu8117: Atu8117 - hypothetical protein, at 243,482 to 243,883
Atu8117
Atu0245: Atu0245 - transcriptional regulator, at 243,980 to 244,561
Atu0245
Atu0246: Atu0246 - acetyltransferase, at 244,579 to 245,097
Atu0246
Position (kb) 243
244 Strain fitness (log2 ratio) -2
-1
0
1 at 242.535 kb on - strand, within Atu0242 at 242.569 kb on + strand, within Atu0242 at 242.576 kb on + strand, within Atu0242 at 242.622 kb on + strand, within Atu0242 at 242.756 kb on + strand at 242.761 kb on + strand at 242.761 kb on + strand at 242.764 kb on - strand at 242.764 kb on - strand at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.135 kb on - strand, within Atu0243 at 243.142 kb on - strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.169 kb on + strand, within Atu0243 at 243.310 kb on - strand, within Atu0243 at 243.344 kb on - strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.425 kb on + strand at 243.433 kb on - strand at 243.433 kb on - strand at 243.518 kb on - strand at 243.534 kb on - strand, within Atu8117 at 243.580 kb on - strand, within Atu8117 at 243.713 kb on - strand, within Atu8117 at 243.815 kb on - strand, within Atu8117 at 243.848 kb on + strand at 244.020 kb on - strand at 244.156 kb on + strand, within Atu0245 at 244.166 kb on + strand, within Atu0245 at 244.169 kb on - strand, within Atu0245 at 244.174 kb on - strand, within Atu0245 at 244.239 kb on + strand, within Atu0245 at 244.246 kb on + strand, within Atu0245 at 244.258 kb on + strand, within Atu0245 at 244.439 kb on + strand, within Atu0245 at 244.442 kb on - strand, within Atu0245 at 244.445 kb on + strand, within Atu0245 at 244.553 kb on - strand at 244.573 kb on - strand at 244.714 kb on - strand, within Atu0246 at 244.759 kb on + strand, within Atu0246 at 244.784 kb on + strand, within Atu0246 at 244.791 kb on + strand, within Atu0246 at 244.799 kb on - strand, within Atu0246 at 244.799 kb on - strand, within Atu0246
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 242,535 - Atu0242 0.69 -0.1 242,569 + Atu0242 0.73 +0.3 242,576 + Atu0242 0.73 +0.1 242,622 + Atu0242 0.79 +0.5 242,756 + -0.3 242,761 + -0.3 242,761 + +0.1 242,764 - +0.7 242,764 - +0.5 243,067 + Atu0243 0.43 -0.2 243,067 + Atu0243 0.43 -0.0 243,067 + Atu0243 0.43 -0.8 243,067 + Atu0243 0.43 -1.4 243,067 + Atu0243 0.43 +0.1 243,067 + Atu0243 0.43 -0.4 243,075 - Atu0243 0.44 -0.9 243,075 - Atu0243 0.44 -0.2 243,075 - Atu0243 0.44 -0.0 243,075 - Atu0243 0.44 +0.6 243,075 - Atu0243 0.44 +0.1 243,135 - Atu0243 0.54 -0.1 243,142 - Atu0243 0.55 -0.3 243,159 + Atu0243 0.58 +0.1 243,159 + Atu0243 0.58 -1.1 243,167 - Atu0243 0.59 -0.4 243,167 - Atu0243 0.59 -0.1 243,169 + Atu0243 0.60 -0.0 243,310 - Atu0243 0.83 -0.1 243,344 - Atu0243 0.88 -0.1 243,345 + Atu0243 0.88 -0.1 243,345 + Atu0243 0.88 -0.5 243,425 + +0.8 243,433 - +0.9 243,433 - +0.3 243,518 - -0.6 243,534 - Atu8117 0.13 -1.5 243,580 - Atu8117 0.24 -0.4 243,713 - Atu8117 0.57 -0.2 243,815 - Atu8117 0.83 -0.3 243,848 + +0.4 244,020 - -0.9 244,156 + Atu0245 0.30 +0.2 244,166 + Atu0245 0.32 -0.5 244,169 - Atu0245 0.32 -0.2 244,174 - Atu0245 0.33 +0.3 244,239 + Atu0245 0.45 -0.2 244,246 + Atu0245 0.46 -1.9 244,258 + Atu0245 0.48 +0.1 244,439 + Atu0245 0.79 +0.0 244,442 - Atu0245 0.79 -0.5 244,445 + Atu0245 0.80 -0.0 244,553 - -0.3 244,573 - -0.2 244,714 - Atu0246 0.26 +0.0 244,759 + Atu0246 0.35 +0.3 244,784 + Atu0246 0.39 -0.6 244,791 + Atu0246 0.41 +0.3 244,799 - Atu0246 0.42 -0.0 244,799 - Atu0246 0.42 -0.1
Or see this region's nucleotide sequence